Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000638A_C01 KMC000638A_c01
(743 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175645.1| coatomer complex subunit, putative; protein id:... 358 3e-98
pir||C96831 hypothetical protein F18B13.7 [imported] - Arabidops... 358 4e-98
gb|AAM53344.1| putative coatomer complex subunit [Arabidopsis th... 350 9e-96
ref|NP_188219.1| putative coatomer complex subunit; protein id: ... 349 2e-95
ref|NP_178116.1| putative coatomer protein complex, subunit beta... 343 1e-93
>ref|NP_175645.1| coatomer complex subunit, putative; protein id: At1g52360.1
[Arabidopsis thaliana] gi|25312791|pir||G96563 probable
coatomer complex subunit, 33791-27676 [imported] -
Arabidopsis thaliana
gi|12323125|gb|AAG51545.1|AC037424_10 coatomer complex
subunit, putative; 33791-27676 [Arabidopsis thaliana]
Length = 926
Score = 358 bits (920), Expect = 3e-98
Identities = 170/178 (95%), Positives = 175/178 (97%)
Frame = +1
Query: 208 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTMAKSFEVTELPV 387
MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQTQ MAKSFEVTELPV
Sbjct: 1 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPV 60
Query: 388 RSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 567
RSAKF+ARKQWVVAGADDM+IRVYNYNTMDKVKVFEAH+DYIRCVAVHPTLPYVLSSSDD
Sbjct: 61 RSAKFVARKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDD 120
Query: 568 MLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIRIRNLGSPDPN 741
MLIKLWDWEKGW CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI+I NLGSPDPN
Sbjct: 121 MLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 178
Score = 54.3 bits (129), Expect = 2e-06
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Frame = +1
Query: 250 SERVKSVDLHPTEPWILASL-YSGTVCIWNYQTQTMAKSFEVTELPVRSAKFIAR--KQW 420
S V V +P + AS T+ IWN + + + + V + K +
Sbjct: 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY 201
Query: 421 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 585
++ G+DD +V++Y T V+ E HT + V HP LP +++ S+D +++W
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
>pir||C96831 hypothetical protein F18B13.7 [imported] - Arabidopsis thaliana
gi|5902363|gb|AAD55465.1|AC009322_5 Putative coatomer
protein complex, subunit beta 2 (beta prime)
[Arabidopsis thaliana] gi|20259354|gb|AAM14001.1|
putative coatomer protein complex, subunit beta 2 (beta
prime) [Arabidopsis thaliana]
Length = 920
Score = 358 bits (919), Expect = 4e-98
Identities = 169/178 (94%), Positives = 174/178 (96%)
Frame = +1
Query: 208 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTMAKSFEVTELPV 387
MPLRLEIKRK AQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQTQTM KSF+VTELPV
Sbjct: 1 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPV 60
Query: 388 RSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 567
RSAKFIARKQWVVAGADDMFIRVYNYNTMDK+KVFEAH DYIRCVAVHPTLPYVLSSSDD
Sbjct: 61 RSAKFIARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDD 120
Query: 568 MLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIRIRNLGSPDPN 741
MLIKLWDWEKGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI+I NLGSPDPN
Sbjct: 121 MLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 178
Score = 52.8 bits (125), Expect = 5e-06
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Frame = +1
Query: 250 SERVKSVDLHPTEPWILASL-YSGTVCIWNYQTQTMAKSFEVTELPVRSAKFIAR--KQW 420
S V V +P + AS T+ IWN + + + V + K +
Sbjct: 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPY 201
Query: 421 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 585
++ G+DD +V++Y T V+ E HT + V+ HP LP +++ S+D +++W
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIW 256
Score = 32.0 bits (71), Expect = 9.5
Identities = 13/62 (20%), Positives = 32/62 (50%)
Frame = +1
Query: 286 EPWILASLYSGTVCIWNYQTQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNY 465
+P+++ T +W+YQT++ ++ E V + F ++ G++D +R+++
Sbjct: 199 KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIWHA 258
Query: 466 NT 471
T
Sbjct: 259 TT 260
>gb|AAM53344.1| putative coatomer complex subunit [Arabidopsis thaliana]
gi|24899747|gb|AAN65088.1| putative coatomer complex
subunit [Arabidopsis thaliana]
Length = 909
Score = 350 bits (899), Expect = 9e-96
Identities = 166/178 (93%), Positives = 171/178 (95%)
Frame = +1
Query: 208 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTMAKSFEVTELPV 387
MPLRL+IKRK AQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQT+ KSFEVTELPV
Sbjct: 1 MPLRLDIKRKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELPV 60
Query: 388 RSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD 567
RSAKFI RKQWVVAGADDM+IRVYNYNTMDKVKVFEAH+DYIRCVAVHPTLPYVLSSSDD
Sbjct: 61 RSAKFIPRKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDD 120
Query: 568 MLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIRIRNLGSPDPN 741
MLIKLWDWE GW CTQIFEGHSHYVMQV FNPKDTNTFASASLDRTI+I NLGSPDPN
Sbjct: 121 MLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPN 178
Score = 52.4 bits (124), Expect = 7e-06
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Frame = +1
Query: 250 SERVKSVDLHPTEPWILASL-YSGTVCIWNYQTQTMAKSFEVTELPVRSAKFIAR--KQW 420
S V V +P + AS T+ IWN + + + + V + K +
Sbjct: 142 SHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY 201
Query: 421 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 585
++ G+DD +V++Y T V+ + HT + V HP LP +++ S+D +++W
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
>ref|NP_188219.1| putative coatomer complex subunit; protein id: At3g15980.1
[Arabidopsis thaliana]
Length = 921
Score = 349 bits (896), Expect = 2e-95
Identities = 165/179 (92%), Positives = 171/179 (95%)
Frame = +1
Query: 205 EMPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTMAKSFEVTELP 384
+ PLRL+IKRK AQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQT+ KSFEVTELP
Sbjct: 3 QQPLRLDIKRKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELP 62
Query: 385 VRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD 564
VRSAKFI RKQWVVAGADDM+IRVYNYNTMDKVKVFEAH+DYIRCVAVHPTLPYVLSSSD
Sbjct: 63 VRSAKFIPRKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSD 122
Query: 565 DMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIRIRNLGSPDPN 741
DMLIKLWDWE GW CTQIFEGHSHYVMQV FNPKDTNTFASASLDRTI+I NLGSPDPN
Sbjct: 123 DMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPN 181
Score = 52.4 bits (124), Expect = 7e-06
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Frame = +1
Query: 250 SERVKSVDLHPTEPWILASL-YSGTVCIWNYQTQTMAKSFEVTELPVRSAKFIAR--KQW 420
S V V +P + AS T+ IWN + + + + V + K +
Sbjct: 145 SHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY 204
Query: 421 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 585
++ G+DD +V++Y T V+ + HT + V HP LP +++ S+D +++W
Sbjct: 205 LITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 259
>ref|NP_178116.1| putative coatomer protein complex, subunit beta 2 (beta prime);
protein id: At1g79990.1 [Arabidopsis thaliana]
gi|12324597|gb|AAG52258.1|AC011717_26 putative coatomer
protein complex, subunit beta 2 (beta prime);
18270-12231 [Arabidopsis thaliana]
Length = 913
Score = 343 bits (880), Expect = 1e-93
Identities = 161/170 (94%), Positives = 166/170 (96%)
Frame = +1
Query: 232 RKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTMAKSFEVTELPVRSAKFIAR 411
RK AQRSERVKSVDLHPTEPWILASLYSGT+CIWNYQTQTM KSF+VTELPVRSAKFIAR
Sbjct: 2 RKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPVRSAKFIAR 61
Query: 412 KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 591
KQWVVAGADDMFIRVYNYNTMDK+KVFEAH DYIRCVAVHPTLPYVLSSSDDMLIKLWDW
Sbjct: 62 KQWVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDDMLIKLWDW 121
Query: 592 EKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIRIRNLGSPDPN 741
EKGW+CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI+I NLGSPDPN
Sbjct: 122 EKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 171
Score = 52.8 bits (125), Expect = 5e-06
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Frame = +1
Query: 250 SERVKSVDLHPTEPWILASL-YSGTVCIWNYQTQTMAKSFEVTELPVRSAKFIAR--KQW 420
S V V +P + AS T+ IWN + + + V + K +
Sbjct: 135 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPY 194
Query: 421 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 585
++ G+DD +V++Y T V+ E HT + V+ HP LP +++ S+D +++W
Sbjct: 195 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIW 249
Score = 32.0 bits (71), Expect = 9.5
Identities = 13/62 (20%), Positives = 32/62 (50%)
Frame = +1
Query: 286 EPWILASLYSGTVCIWNYQTQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNY 465
+P+++ T +W+YQT++ ++ E V + F ++ G++D +R+++
Sbjct: 192 KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIWHA 251
Query: 466 NT 471
T
Sbjct: 252 TT 253
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 659,848,601
Number of Sequences: 1393205
Number of extensions: 14583963
Number of successful extensions: 51115
Number of sequences better than 10.0: 1862
Number of HSP's better than 10.0 without gapping: 42311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48628
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35751090169
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
