Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000636A_C01 KMC000636A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD22104.1| B12D protein [Ipomoea batatas] 138 7e-32
ref|NP_190397.1| B12D-like protein; protein id: At3g48140.1, sup... 131 8e-30
gb|AAB65433.1| HvB12D homolog [Oryza sativa] gi|18644696|gb|AAL7... 124 1e-27
gb|AAL17696.1| B12D-like protein [Castanea sativa] 120 2e-26
pir||S60284 B12D protein - barley gi|471319|emb|CAA54065.1| HvB1... 115 6e-25
>gb|AAD22104.1| B12D protein [Ipomoea batatas]
Length = 90
Score = 138 bits (347), Expect = 7e-32
Identities = 62/87 (71%), Positives = 73/87 (83%)
Frame = -2
Query: 585 SRWLRPEVYPLFAAVGVAVGICGMQLVRNICINPEVRVNKQNRAAGVLDNFSEGEKYTEH 406
SRW+RPEVYPLFAA+ VAVGICG QL+RN+ NPEVRVNK+ RAAGVL+N+ EG+KY EH
Sbjct: 4 SRWIRPEVYPLFAAMSVAVGICGFQLIRNLTTNPEVRVNKEGRAAGVLENYEEGKKYAEH 63
Query: 405 FIRKFARTSSREIMPSINSFFADPSRN 325
+RKF R S EIMPS+N FF+DP RN
Sbjct: 64 SLRKFVRNKSPEIMPSLNRFFSDPQRN 90
>ref|NP_190397.1| B12D-like protein; protein id: At3g48140.1, supported by cDNA:
gi_19698958 [Arabidopsis thaliana]
gi|7487384|pir||T13003 hypothetical protein T24C20.20 -
Arabidopsis thaliana gi|5541720|emb|CAB51061.1|
B12D-like protein [Arabidopsis thaliana]
gi|19698959|gb|AAL91215.1| B12D-like protein
[Arabidopsis thaliana] gi|24899711|gb|AAN65070.1|
B12D-like protein [Arabidopsis thaliana]
Length = 88
Score = 131 bits (329), Expect = 8e-30
Identities = 60/87 (68%), Positives = 69/87 (78%)
Frame = -2
Query: 591 LASRWLRPEVYPLFAAVGVAVGICGMQLVRNICINPEVRVNKQNRAAGVLDNFSEGEKYT 412
+ASRWLRPEVYPLFAA GVAVGIC L+RNI NPEVR K+NRAAG+LDN +EGEKY
Sbjct: 1 MASRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYK 60
Query: 411 EHFIRKFARTSSREIMPSINSFFADPS 331
E+F+RKF R EIMP +N FF DP+
Sbjct: 61 ENFLRKFVRNKKPEIMPGLNKFFTDPT 87
>gb|AAB65433.1| HvB12D homolog [Oryza sativa] gi|18644696|gb|AAL76334.1| putative
G-box binding protein [Oryza sativa]
Length = 89
Score = 124 bits (310), Expect = 1e-27
Identities = 57/87 (65%), Positives = 69/87 (78%)
Frame = -2
Query: 588 ASRWLRPEVYPLFAAVGVAVGICGMQLVRNICINPEVRVNKQNRAAGVLDNFSEGEKYTE 409
+SRW+RPEVYPLFAA+GVAVGICG QL RNI NPEVRVNK RAAGVL+N EG +Y E
Sbjct: 3 SSRWVRPEVYPLFAAMGVAVGICGFQLFRNITGNPEVRVNKVGRAAGVLENHEEGRRYAE 62
Query: 408 HFIRKFARTSSREIMPSINSFFADPSR 328
H +R + R + EIMP+IN FF +P++
Sbjct: 63 HGLRNYVRDKTPEIMPAINKFFTEPTK 89
>gb|AAL17696.1| B12D-like protein [Castanea sativa]
Length = 134
Score = 120 bits (300), Expect = 2e-26
Identities = 57/91 (62%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
Frame = -2
Query: 603 FYPTLASRWLRPEVYPLFAAVGVAVGICGMQLVRNICINPEVRVNKQNRAA-GVLDNFSE 427
++P + WLRPEVYPLFA VGVAVGIC MQLVRNIC NPEVRV K+N + L NF E
Sbjct: 24 WHPPPPTEWLRPEVYPLFATVGVAVGICAMQLVRNICTNPEVRVTKENNSCRKCLHNFEE 83
Query: 426 GEKYTEHFIRKFARTSSREIMPSINSFFADP 334
GEKY++H +RKF S IMPS+ SFF++P
Sbjct: 84 GEKYSQHAVRKFVLNRSPHIMPSLKSFFSEP 114
>pir||S60284 B12D protein - barley gi|471319|emb|CAA54065.1| HvB12D [Hordeum
vulgare subsp. vulgare] gi|3445292|emb|CAA70936.1|
B12Dg1 [Hordeum vulgare subsp. vulgare]
Length = 87
Score = 115 bits (287), Expect = 6e-25
Identities = 52/86 (60%), Positives = 64/86 (73%)
Frame = -2
Query: 591 LASRWLRPEVYPLFAAVGVAVGICGMQLVRNICINPEVRVNKQNRAAGVLDNFSEGEKYT 412
+AS+W+RPEVYPLFAA GVA+GIC L+RNI NPEVRV+K RAAGVL+N EG +Y
Sbjct: 1 MASKWVRPEVYPLFAATGVAIGICAFSLLRNITGNPEVRVSKMGRAAGVLENHEEGRRYA 60
Query: 411 EHFIRKFARTSSREIMPSINSFFADP 334
EH +R + + + EIMP IN FF P
Sbjct: 61 EHGLRAYVQDKTPEIMPGINKFFTSP 86
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,587,639
Number of Sequences: 1393205
Number of extensions: 11882374
Number of successful extensions: 67174
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 41738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56190
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
