Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000634A_C01 KMC000634A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB52797.1| putative external rotenone-insensitive NADH dehy... 173 1e-42
ref|NP_193880.1| NADH dehydrogenase like protein; protein id: At... 167 8e-41
ref|NP_179673.1| putative NADH-ubiquinone oxireductase; protein ... 166 1e-40
ref|NP_567283.1| coded for by A. thaliana cDNA W43435; protein i... 164 4e-40
pir||B85063 hypothetical protein AT4g05020 [imported] - Arabidop... 164 4e-40
>emb|CAB52797.1| putative external rotenone-insensitive NADH dehydrogenase [Solanum
tuberosum]
Length = 577
Score = 173 bits (438), Expect = 1e-42
Identities = 74/93 (79%), Positives = 82/93 (87%)
Frame = -3
Query: 504 DHCEQHPEXPRRFTGSGHHRFLPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWY 325
D C+ +PE PRRF SG H FLPF Y+H GQFAPLGG+QAAAELPGDWVS+GHSTQWLWY
Sbjct: 485 DQCKSNPEGPRRFKSSGRHEFLPFEYRHLGQFAPLGGDQAAAELPGDWVSMGHSTQWLWY 544
Query: 324 SVYASKQVSWRTRYLVVSDWARRFVFGRDSSRV 226
SVYASKQVSWRTRYLVV DW RR++FGRDSSR+
Sbjct: 545 SVYASKQVSWRTRYLVVGDWVRRYIFGRDSSRI 577
>ref|NP_193880.1| NADH dehydrogenase like protein; protein id: At4g21490.1
[Arabidopsis thaliana] gi|7432655|pir||T05157 NADH
dehydrogenase (ubiquinone) chain NDI1 homolog F18E5.110
- Arabidopsis thaliana gi|3080393|emb|CAA18713.1| NADH
dehydrogenase like protein [Arabidopsis thaliana]
gi|7268946|emb|CAB81256.1| NADH dehydrogenase like
protein [Arabidopsis thaliana]
Length = 478
Score = 167 bits (422), Expect = 8e-41
Identities = 73/91 (80%), Positives = 80/91 (87%)
Frame = -3
Query: 498 CEQHPEXPRRFTGSGHHRFLPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWYSV 319
CE++PE P R G G HRF PFRY+H GQFAPLGGEQ AA+LPGDWVSIGHS+QWLWYSV
Sbjct: 388 CEKNPEGPIRIRGEGRHRFRPFRYRHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSV 447
Query: 318 YASKQVSWRTRYLVVSDWARRFVFGRDSSRV 226
YASKQVSWRTR LVVSDW RRF+FGRDSSR+
Sbjct: 448 YASKQVSWRTRVLVVSDWMRRFIFGRDSSRI 478
>ref|NP_179673.1| putative NADH-ubiquinone oxireductase; protein id: At2g20800.1
[Arabidopsis thaliana] gi|25285262|pir||E84593 probable
NADH-ubiquinone oxireductase [imported] - Arabidopsis
thaliana gi|4454468|gb|AAD20915.1| putative
NADH-ubiquinone oxireductase [Arabidopsis thaliana]
Length = 582
Score = 166 bits (420), Expect = 1e-40
Identities = 73/93 (78%), Positives = 79/93 (84%)
Frame = -3
Query: 504 DHCEQHPEXPRRFTGSGHHRFLPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWY 325
+ CE+ PE P RF G G HRF PFRY+HFG FAPLGGEQ AAELPGDWVSIGHS+QWLWY
Sbjct: 490 EKCEKKPEGPLRFRGEGRHRFQPFRYRHFGSFAPLGGEQTAAELPGDWVSIGHSSQWLWY 549
Query: 324 SVYASKQVSWRTRYLVVSDWARRFVFGRDSSRV 226
SVYASK VSWRTR LV+SDW RRFVFGRDSS +
Sbjct: 550 SVYASKLVSWRTRMLVISDWTRRFVFGRDSSSI 582
>ref|NP_567283.1| coded for by A. thaliana cDNA W43435; protein id: At4g05020.1,
supported by cDNA: gi_14532463 [Arabidopsis thaliana]
gi|14532464|gb|AAK63960.1| AT4g05020/T32N4_4
[Arabidopsis thaliana] gi|25090208|gb|AAN72252.1|
At4g05020/T32N4_4 [Arabidopsis thaliana]
Length = 582
Score = 164 bits (416), Expect = 4e-40
Identities = 72/93 (77%), Positives = 79/93 (84%)
Frame = -3
Query: 504 DHCEQHPEXPRRFTGSGHHRFLPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWY 325
+ CE+ PE P R G G HRF PFRY+H GQFAPLGGEQ AA+LPGDWVSIGHS+QWLWY
Sbjct: 490 EECEKSPEGPIRMRGEGRHRFRPFRYRHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWY 549
Query: 324 SVYASKQVSWRTRYLVVSDWARRFVFGRDSSRV 226
SVYASKQVSWRTR LVVSDW RRF+FGRDSS +
Sbjct: 550 SVYASKQVSWRTRVLVVSDWMRRFIFGRDSSSI 582
>pir||B85063 hypothetical protein AT4g05020 [imported] - Arabidopsis thaliana
gi|5732076|gb|AAD48975.1|AF162444_7 contains similarity
to Pfam family PF00070 - Pyridine nucleotide-disulphide
oxidoreductase class-I; score=26.1, E=0.0008, N=1
[Arabidopsis thaliana] gi|7267261|emb|CAB81044.1|
contains similarity to Pfam family PF00070 - Pyridine
nucleotide-disulphide oxidoreductase class-I,
score=26.1, E=0.0008, N=1, coded for by A. thaliana cDNA
W43435~strong similarity to~Contains EF-hand
calcium-binding domain AA393-405~contains EST gb:W43435
[Arabidopsis thaliana]
Length = 583
Score = 164 bits (416), Expect = 4e-40
Identities = 72/93 (77%), Positives = 79/93 (84%)
Frame = -3
Query: 504 DHCEQHPEXPRRFTGSGHHRFLPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWY 325
+ CE+ PE P R G G HRF PFRY+H GQFAPLGGEQ AA+LPGDWVSIGHS+QWLWY
Sbjct: 491 EECEKSPEGPIRMRGEGRHRFRPFRYRHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWY 550
Query: 324 SVYASKQVSWRTRYLVVSDWARRFVFGRDSSRV 226
SVYASKQVSWRTR LVVSDW RRF+FGRDSS +
Sbjct: 551 SVYASKQVSWRTRVLVVSDWMRRFIFGRDSSSI 583
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,892,477
Number of Sequences: 1393205
Number of extensions: 11550777
Number of successful extensions: 35117
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 33772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35101
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
