Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000632A_C01 KMC000632A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL91501.1|AF482394_1 ABC transporter AbcG16 [Dictyostelium d... 33 1.6
ref|ZP_00085396.1| hypothetical protein [Pseudomonas fluorescens... 32 5.9
>gb|AAL91501.1|AF482394_1 ABC transporter AbcG16 [Dictyostelium discoideum]
Length = 1528
Score = 33.5 bits (75), Expect = 1.6
Identities = 12/46 (26%), Positives = 31/46 (67%)
Frame = +3
Query: 27 HQYTNDH*ITIIKSSNEQHKGKAHQINITKRLQMNITQSVVSVCGD 164
H+++ D I II++ EQ + + +Q+++ K++Q+N+ ++ ++ D
Sbjct: 466 HKFSGDKSIKIIENEKEQQQQEIYQLSLIKQIQLNLKRAFLTTIRD 511
>ref|ZP_00085396.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 183
Score = 31.6 bits (70), Expect = 5.9
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Frame = -2
Query: 232 SHQNS-KLGLLLLVFLLVTKAMQTSPQTDTTLCVIFICKRFVIL------------I*WA 92
+HQNS + +L V +L+ QT+ TL +IF+ R L + W
Sbjct: 104 AHQNSIEAFILFAVGVLMAHTTQTAGWLIDTLAIIFVISRIFYLWFYLADIPKLRSLVWL 163
Query: 91 LPLCCSLLLLI 59
+ L CSLLL+I
Sbjct: 164 VGLVCSLLLMI 174
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,269,389
Number of Sequences: 1393205
Number of extensions: 11235971
Number of successful extensions: 27100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27088
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
