Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000631A_C01 KMC000631A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_013028.1| Protein with similarity to flocculation protein... 34 0.96
ref|NP_495282.1| Pleckstrin homology domain protein (115.0 kD) [... 34 0.96
ref|NP_623986.1| Na+/melibiose symporter and related transporter... 34 1.3
gb|ZP_00110287.1| hypothetical protein [Nostoc punctiforme] 33 2.8
ref|NP_373017.1| hypothetical protein [Staphylococcus aureus sub... 33 2.8
>ref|NP_013028.1| Protein with similarity to flocculation protein Flo1p; Flo10p
[Saccharomyces cerevisiae]
gi|549648|sp|P36170|YK82_YEAST HYPOTHETICAL 122.2 KD
PROTEIN IN SIR1 3'REGION PRECURSOR gi|539113|pir||S38181
flocculation protein FLO1 homolog YKR102w - yeast
(Saccharomyces cerevisiae) gi|486609|emb|CAA82182.1| ORF
YKR102w [Saccharomyces cerevisiae]
Length = 1169
Score = 34.3 bits (77), Expect = 0.96
Identities = 26/94 (27%), Positives = 48/94 (50%), Gaps = 2/94 (2%)
Frame = +1
Query: 247 LISNSCTSEGK*QENKVEIQKVGS-PTPLKGAV-LKQKNTDNEVDNTNIESISEFNIPQT 420
++ ++ TSE K K ++ + S PT L + K++ +++ IS ++P +
Sbjct: 712 ILPSTITSEFKPSTMKTKVVSISSSPTNLITSYDTTSKDSTVGSSTSSVSLISSISLPSS 771
Query: 421 YNARRRQITDAEIVSSFRRIMVPKNSTIISSFSS 522
Y+A QI + IVSS + + +ST +SS S
Sbjct: 772 YSASSEQIFHSSIVSSNGQALTSFSSTKVSSSES 805
>ref|NP_495282.1| Pleckstrin homology domain protein (115.0 kD) [Caenorhabditis
elegans] gi|7505691|pir||T16604 hypothetical protein
K10B2.5 - Caenorhabditis elegans
gi|860699|gb|AAA68262.1| Hypothetical protein K10B2.5
[Caenorhabditis elegans]
Length = 1009
Score = 34.3 bits (77), Expect = 0.96
Identities = 21/65 (32%), Positives = 32/65 (48%), Gaps = 6/65 (9%)
Frame = +1
Query: 271 EGK*QENKVEIQKVGSPTPLKGAVLK------QKNTDNEVDNTNIESISEFNIPQTYNAR 432
EG + KV +QK+ P+ L + K KN N D++ + SIS F+ N
Sbjct: 575 EGCAKTEKVVVQKMSQPSALATSTPKGTFAWRNKNQSNAADDSFVSSISNFSAADKINDS 634
Query: 433 RRQIT 447
+RQI+
Sbjct: 635 KRQIS 639
>ref|NP_623986.1| Na+/melibiose symporter and related transporters
[Thermoanaerobacter tengcongensis]
gi|20517465|gb|AAM25590.1| Na+/melibiose symporter and
related transporters [Thermoanaerobacter tengcongensis]
Length = 434
Score = 33.9 bits (76), Expect = 1.3
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = -2
Query: 172 MLGRGFVCTSL*VPGRGFIAMYSDTSLICYEYYFIVLSFGTQGIKLILIYISFVFFS 2
M GR F + G I++++ T++ Y+YY+ +F TQG+K IL+ I + FS
Sbjct: 1 MKGRRFFVLFMYSLGYMGISIFTQTAVKWYQYYYTPPAFNTQGLK-ILVPIGLIGFS 56
>gb|ZP_00110287.1| hypothetical protein [Nostoc punctiforme]
Length = 349
Score = 32.7 bits (73), Expect = 2.8
Identities = 21/44 (47%), Positives = 24/44 (53%), Gaps = 1/44 (2%)
Frame = +1
Query: 244 ALISNSCTSEG-K*QENKVEIQKVGSPTPLKGAVLKQKNTDNEV 372
ALI+NSC S G K QEN I G+ TP + VL T EV
Sbjct: 268 ALIANSCISRGTKRQENSFTITGSGALTPNRPGVLVSNYTTGEV 311
>ref|NP_373017.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15928072|ref|NP_375605.1| hypothetical protein
[Staphylococcus aureus subsp. aureus N315]
gi|25507415|pir||F90052 hypothetical protein [imported]
- Staphylococcus aureus (strain N315)
gi|13702443|dbj|BAB43584.1| hypothetical protein
[Staphylococcus aureus subsp. aureus N315]
gi|14248267|dbj|BAB58655.1| hypothetical protein
[Staphylococcus aureus subsp. aureus Mu50]
Length = 102
Score = 32.7 bits (73), Expect = 2.8
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -2
Query: 115 AMYSDTSLICYEYYFIVLSFGTQGIKLILIYISFVFF 5
A++ +S++C+EY FI LSF I L+LI + +V F
Sbjct: 59 AVFLMSSILCFEYDFIALSFLFLTIALLLIALFYVCF 95
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,895,829
Number of Sequences: 1393205
Number of extensions: 9309118
Number of successful extensions: 25214
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 24631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25201
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
