Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000630A_C01 KMC000630A_c01
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52403 hypothetical protein MMB12.22 [imported] - Arabidops... 139 4e-32
ref|NP_188608.1| ATPase, putative; protein id: At3g19740.1 [Arab... 139 4e-32
ref|NP_175433.1| hypothetical protein; protein id: At1g50140.1 [... 137 1e-31
pir||G96537 hypothetical protein F2J10.1 [imported] - Arabidopsi... 137 1e-31
ref|NP_171788.1| hypothetical protein; protein id: At1g02890.1 [... 99 5e-20
>pir||T52403 hypothetical protein MMB12.22 [imported] - Arabidopsis thaliana
gi|9294440|dbj|BAB02560.1| contains similarity to
unknown protein~gb|AAF02877.1~gene_id:MMB12.22
[Arabidopsis thaliana]
Length = 270
Score = 139 bits (349), Expect = 4e-32
Identities = 67/91 (73%), Positives = 80/91 (87%), Gaps = 2/91 (2%)
Frame = -1
Query: 639 TDGYSGSDLKNLCITAAYRPVQELLEEEKAGDNNITNVA--LRPLNLDDFVQSKSQVGPS 466
T+GYSGSDLKNLCI AAYRPVQELL+EE +++TN + LRPL+LDDF+QSK++V PS
Sbjct: 182 TEGYSGSDLKNLCIAAAYRPVQELLQEENK--DSVTNASPDLRPLSLDDFIQSKAKVSPS 239
Query: 465 VAYDAVSVNELRKWNEMYGEGGTRTQSPFGF 373
VAYDA ++NELRKWNE YGEGGTRT+SPFGF
Sbjct: 240 VAYDATTMNELRKWNEQYGEGGTRTKSPFGF 270
>ref|NP_188608.1| ATPase, putative; protein id: At3g19740.1 [Arabidopsis thaliana]
Length = 439
Score = 139 bits (349), Expect = 4e-32
Identities = 67/91 (73%), Positives = 80/91 (87%), Gaps = 2/91 (2%)
Frame = -1
Query: 639 TDGYSGSDLKNLCITAAYRPVQELLEEEKAGDNNITNVA--LRPLNLDDFVQSKSQVGPS 466
T+GYSGSDLKNLCI AAYRPVQELL+EE +++TN + LRPL+LDDF+QSK++V PS
Sbjct: 351 TEGYSGSDLKNLCIAAAYRPVQELLQEENK--DSVTNASPDLRPLSLDDFIQSKAKVSPS 408
Query: 465 VAYDAVSVNELRKWNEMYGEGGTRTQSPFGF 373
VAYDA ++NELRKWNE YGEGGTRT+SPFGF
Sbjct: 409 VAYDATTMNELRKWNEQYGEGGTRTKSPFGF 439
>ref|NP_175433.1| hypothetical protein; protein id: At1g50140.1 [Arabidopsis
thaliana]
Length = 640
Score = 137 bits (345), Expect = 1e-31
Identities = 64/89 (71%), Positives = 76/89 (84%)
Frame = -1
Query: 639 TDGYSGSDLKNLCITAAYRPVQELLEEEKAGDNNITNVALRPLNLDDFVQSKSQVGPSVA 460
T+GYSGSDLKNLCI AAYRPVQELL+EE+ G + LR L+LDDF+QSK++V PSVA
Sbjct: 552 TEGYSGSDLKNLCIAAAYRPVQELLQEEQKGARAEASPGLRSLSLDDFIQSKAKVSPSVA 611
Query: 459 YDAVSVNELRKWNEMYGEGGTRTQSPFGF 373
YDA ++NELRKWNE YGEGG+RT+SPFGF
Sbjct: 612 YDATTMNELRKWNEQYGEGGSRTKSPFGF 640
>pir||G96537 hypothetical protein F2J10.1 [imported] - Arabidopsis thaliana
gi|8569089|gb|AAF76434.1|AC015445_1 Contains similarity
to p60 katanin from Chlamydomonas reinhardtii
gb|AF205377 and contains an AAA domain PF|00004.
[Arabidopsis thaliana]
Length = 627
Score = 137 bits (345), Expect = 1e-31
Identities = 64/89 (71%), Positives = 76/89 (84%)
Frame = -1
Query: 639 TDGYSGSDLKNLCITAAYRPVQELLEEEKAGDNNITNVALRPLNLDDFVQSKSQVGPSVA 460
T+GYSGSDLKNLCI AAYRPVQELL+EE+ G + LR L+LDDF+QSK++V PSVA
Sbjct: 539 TEGYSGSDLKNLCIAAAYRPVQELLQEEQKGARAEASPGLRSLSLDDFIQSKAKVSPSVA 598
Query: 459 YDAVSVNELRKWNEMYGEGGTRTQSPFGF 373
YDA ++NELRKWNE YGEGG+RT+SPFGF
Sbjct: 599 YDATTMNELRKWNEQYGEGGSRTKSPFGF 627
>ref|NP_171788.1| hypothetical protein; protein id: At1g02890.1 [Arabidopsis thaliana]
Length = 1240
Score = 99.0 bits (245), Expect = 5e-20
Identities = 48/102 (47%), Positives = 71/102 (69%), Gaps = 11/102 (10%)
Frame = -1
Query: 645 NLTDGYSGSDLKNLCITAAYRPVQELLEEEK-----------AGDNNITNVALRPLNLDD 499
N+TDGYSGSDLKNLC+TAA+ P++E+LE+EK A ++ +RPLN++D
Sbjct: 1137 NMTDGYSGSDLKNLCVTAAHLPIREILEKEKKERSVAQAENRAMPQLYSSTDVRPLNMND 1196
Query: 498 FVQSKSQVGPSVAYDAVSVNELRKWNEMYGEGGTRTQSPFGF 373
F + QV SVA D+ ++NEL++WNE+YGEGG+R ++ +
Sbjct: 1197 FKTAHDQVCASVASDSSNMNELQQWNELYGEGGSRKKTSLSY 1238
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,796,534
Number of Sequences: 1393205
Number of extensions: 12385426
Number of successful extensions: 26648
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 25897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26602
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
