Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000629A_C01 KMC000629A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174585.1| hypothetical protein; protein id: At1g33090.1 [... 171 6e-42
ref|NP_174587.1| unknown protein; protein id: At1g33110.1, suppo... 170 7e-42
ref|NP_174586.1| unknown protein; protein id: At1g33100.1 [Arabi... 165 2e-40
ref|NP_174584.2| hypothetical protein; protein id: At1g33080.1, ... 160 1e-38
pir||B86455 T9L6.1 protein - Arabidopsis thaliana gi|9665160|gb|... 157 5e-38
>ref|NP_174585.1| hypothetical protein; protein id: At1g33090.1 [Arabidopsis
thaliana]
Length = 494
Score = 171 bits (432), Expect = 6e-42
Identities = 80/131 (61%), Positives = 100/131 (76%)
Frame = -1
Query: 501 LFLRERLAYVFTLDSEVAEAVGDLSPLLSISILLNSVPPVLSGVSVGAGWPSVVAYVNIG 322
LFLR R++Y+FT VA V DLSPLL+ SILLNSV PVLSGV+VGAGW VAY+N+
Sbjct: 358 LFLRGRISYIFTTSEAVAAEVADLSPLLAFSILLNSVQPVLSGVAVGAGWQGYVAYINLA 417
Query: 321 CYYLIGIPVGVVLGNLIHLQEKGVWIGMLFGTFVQTVMLITITLKTDWENQVVIARNRVN 142
CYYL+GIPVG+VLG ++ LQ KGVWIGMLFG FVQT +L +TL+TDW+ QV + +N
Sbjct: 418 CYYLLGIPVGLVLGYVVGLQVKGVWIGMLFGIFVQTCVLTIMTLRTDWDQQVSTSLKNIN 477
Query: 141 KWAVKENTEPN 109
+W V E+ + N
Sbjct: 478 RWVVPESRDAN 488
>ref|NP_174587.1| unknown protein; protein id: At1g33110.1, supported by cDNA:
gi_17065359 [Arabidopsis thaliana]
gi|17065360|gb|AAL32834.1| Unknown protein [Arabidopsis
thaliana] gi|21387205|gb|AAM48006.1| unknown protein
[Arabidopsis thaliana]
Length = 494
Score = 170 bits (431), Expect = 7e-42
Identities = 79/134 (58%), Positives = 101/134 (74%)
Frame = -1
Query: 501 LFLRERLAYVFTLDSEVAEAVGDLSPLLSISILLNSVPPVLSGVSVGAGWPSVVAYVNIG 322
LFLR R++Y+FT VA V DLSPLL+ SIL+NSV PVLSGV+VGAGW V YVN+
Sbjct: 358 LFLRGRVSYIFTTSEAVAAEVADLSPLLAFSILMNSVQPVLSGVAVGAGWQGYVTYVNLA 417
Query: 321 CYYLIGIPVGVVLGNLIHLQEKGVWIGMLFGTFVQTVMLITITLKTDWENQVVIARNRVN 142
CYYL+GIP+G++LG ++ LQ KGVWIGMLFG FVQT +L +TL+TDW+ QV + R+N
Sbjct: 418 CYYLVGIPIGIILGYVVGLQVKGVWIGMLFGIFVQTCVLTVMTLRTDWDQQVSTSLRRLN 477
Query: 141 KWAVKENTEPNSGS 100
+W V E+ + N S
Sbjct: 478 RWVVPESRDVNQVS 491
>ref|NP_174586.1| unknown protein; protein id: At1g33100.1 [Arabidopsis thaliana]
Length = 475
Score = 165 bits (418), Expect = 2e-40
Identities = 75/126 (59%), Positives = 96/126 (75%)
Frame = -1
Query: 486 RLAYVFTLDSEVAEAVGDLSPLLSISILLNSVPPVLSGVSVGAGWPSVVAYVNIGCYYLI 307
R++Y+FT VA V DLSPLL+ SILLNSV PVLSGV++GAGW VAYVN+ CYYL+
Sbjct: 344 RISYIFTTSEAVAAEVADLSPLLAFSILLNSVQPVLSGVAIGAGWQGYVAYVNLACYYLV 403
Query: 306 GIPVGVVLGNLIHLQEKGVWIGMLFGTFVQTVMLITITLKTDWENQVVIARNRVNKWAVK 127
GIP+GV+LG ++ LQ KGVWIGMLFG FVQT +L +TL+TDW+ QV + +N+W V
Sbjct: 404 GIPIGVILGYVVGLQVKGVWIGMLFGIFVQTCVLTVMTLRTDWDQQVSTSLRNINRWVVP 463
Query: 126 ENTEPN 109
E+ + N
Sbjct: 464 ESRDAN 469
>ref|NP_174584.2| hypothetical protein; protein id: At1g33080.1, supported by cDNA:
gi_19423993 [Arabidopsis thaliana]
gi|19423994|gb|AAL87319.1| unknown protein [Arabidopsis
thaliana] gi|22136880|gb|AAM91784.1| unknown protein
[Arabidopsis thaliana]
Length = 494
Score = 160 bits (404), Expect = 1e-38
Identities = 74/131 (56%), Positives = 96/131 (72%)
Frame = -1
Query: 501 LFLRERLAYVFTLDSEVAEAVGDLSPLLSISILLNSVPPVLSGVSVGAGWPSVVAYVNIG 322
LFLRER++Y+FT VA V DLSPLL+ SILLNS+ PVLSGV+VGAGW V VN+
Sbjct: 358 LFLRERVSYIFTTSEAVATQVADLSPLLAFSILLNSIQPVLSGVAVGAGWQKYVTVVNLA 417
Query: 321 CYYLIGIPVGVVLGNLIHLQEKGVWIGMLFGTFVQTVMLITITLKTDWENQVVIARNRVN 142
CYYL+GIP G+ LG ++ LQ KGVW+GM+FG FVQT +L +T++TDW+ QV + R+N
Sbjct: 418 CYYLVGIPSGLFLGYVVGLQVKGVWLGMIFGIFVQTCVLTVMTMRTDWDQQVSSSLKRLN 477
Query: 141 KWAVKENTEPN 109
+W E+ N
Sbjct: 478 RWVEPESPSRN 488
>pir||B86455 T9L6.1 protein - Arabidopsis thaliana
gi|9665160|gb|AAF97344.1|AC021045_1 Hypothetical Protein
[Arabidopsis thaliana]
Length = 424
Score = 157 bits (398), Expect = 5e-38
Identities = 72/113 (63%), Positives = 90/113 (78%)
Frame = -1
Query: 501 LFLRERLAYVFTLDSEVAEAVGDLSPLLSISILLNSVPPVLSGVSVGAGWPSVVAYVNIG 322
LFLR R++Y+FT VA V DLSPLL+ SIL+NSV PVLSGV+VGAGW V YVN+
Sbjct: 302 LFLRGRVSYIFTTSEAVAAEVADLSPLLAFSILMNSVQPVLSGVAVGAGWQGYVTYVNLA 361
Query: 321 CYYLIGIPVGVVLGNLIHLQEKGVWIGMLFGTFVQTVMLITITLKTDWENQVV 163
CYYL+GIP+G++LG ++ LQ KGVWIGMLFG FVQT +L +TL+TDW+ QV+
Sbjct: 362 CYYLVGIPIGIILGYVVGLQVKGVWIGMLFGIFVQTCVLTVMTLRTDWDQQVI 414
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,901,259
Number of Sequences: 1393205
Number of extensions: 10640989
Number of successful extensions: 27829
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 26534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27681
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
