Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000625A_C01 KMC000625A_c01
(773 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179680.1| putative secretory carrier-associated membrane ... 96 4e-19
gb|AAF36688.1|AF225922_1 secretory carrier membrane protein [Ory... 96 4e-19
dbj|BAC15812.1| putative secretory carrier membrane protein [Ory... 96 6e-19
gb|AAC82326.1| similarity to SCAMP37 [Pisum sativum] 95 1e-18
ref|NP_172584.1| secretory carrier membrane protein, putative; p... 92 6e-18
>ref|NP_179680.1| putative secretory carrier-associated membrane protein; protein id:
At2g20840.1 [Arabidopsis thaliana]
gi|25411996|pir||A84594 hypothetical protein At2g20840
[imported] - Arabidopsis thaliana
gi|4454464|gb|AAD20911.1| putative secretory
carrier-associated membrane protein [Arabidopsis
thaliana]
Length = 282
Score = 96.3 bits (238), Expect = 4e-19
Identities = 47/59 (79%), Positives = 52/59 (87%)
Frame = -3
Query: 771 ILAAIDVLGDHALVGIFYFIGFGLFCLESLLSIWVIQQVMMYFRGSGKAAAMKREASQR 595
IL AIDVL + LVGIFYFIGFG FCLESL+SIWVIQQV MYFRGSGKAA MK+EA++R
Sbjct: 218 ILPAIDVLSGNILVGIFYFIGFGFFCLESLVSIWVIQQVYMYFRGSGKAAEMKQEATRR 276
>gb|AAF36688.1|AF225922_1 secretory carrier membrane protein [Oryza sativa]
gi|15289879|dbj|BAB63575.1| secretory carrier membrane
protein [Oryza sativa (japonica cultivar-group)]
Length = 286
Score = 96.3 bits (238), Expect = 4e-19
Identities = 47/58 (81%), Positives = 54/58 (93%)
Frame = -3
Query: 771 ILAAIDVLGDHALVGIFYFIGFGLFCLESLLSIWVIQQVMMYFRGSGKAAAMKREASQ 598
IL AIDV+G++A+VGIFYFIGFGLFCLESLLS+ VIQQV MYFRGSGKAA MKREA++
Sbjct: 222 ILPAIDVIGNNAIVGIFYFIGFGLFCLESLLSVVVIQQVYMYFRGSGKAAEMKREAAR 279
>dbj|BAC15812.1| putative secretory carrier membrane protein [Oryza sativa (japonica
cultivar-group)]
Length = 306
Score = 95.9 bits (237), Expect = 6e-19
Identities = 45/58 (77%), Positives = 53/58 (90%)
Frame = -3
Query: 771 ILAAIDVLGDHALVGIFYFIGFGLFCLESLLSIWVIQQVMMYFRGSGKAAAMKREASQ 598
IL AID++ +ALVGIFYF+GFGLFC+ESLLSIWVIQQV MYFRGSGKAA MKR+A++
Sbjct: 242 ILPAIDLISKNALVGIFYFVGFGLFCVESLLSIWVIQQVYMYFRGSGKAAEMKRDATR 299
>gb|AAC82326.1| similarity to SCAMP37 [Pisum sativum]
Length = 289
Score = 95.1 bits (235), Expect = 1e-18
Identities = 44/57 (77%), Positives = 51/57 (89%)
Frame = -3
Query: 771 ILAAIDVLGDHALVGIFYFIGFGLFCLESLLSIWVIQQVMMYFRGSGKAAAMKREAS 601
IL+AIDV+GD+ LVGIFYFIGFG FCLE+L+SIWVIQQV M+FRG GK A MKREA+
Sbjct: 224 ILSAIDVVGDYTLVGIFYFIGFGFFCLETLISIWVIQQVYMHFRGGGKTAEMKREAA 280
>ref|NP_172584.1| secretory carrier membrane protein, putative; protein id:
At1g11180.1 [Arabidopsis thaliana]
Length = 291
Score = 92.4 bits (228), Expect = 6e-18
Identities = 45/58 (77%), Positives = 51/58 (87%)
Frame = -3
Query: 771 ILAAIDVLGDHALVGIFYFIGFGLFCLESLLSIWVIQQVMMYFRGSGKAAAMKREASQ 598
IL AIDVL ALVGIFYFIGFGLFCLES++SIWVIQQV MYFRGSGKA M+R+A++
Sbjct: 227 ILPAIDVLSAQALVGIFYFIGFGLFCLESVVSIWVIQQVYMYFRGSGKADDMRRDAAR 284
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 655,376,655
Number of Sequences: 1393205
Number of extensions: 14069073
Number of successful extensions: 30550
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 29649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30544
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
