Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000624A_C02 KMC000624A_c02
(860 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568526.1| putative protein; protein id: At5g35180.1, supp... 199 6e-50
dbj|BAA98203.1| emb|CAB77600.1~gene_id:K3D20.2~similar to unknow... 198 8e-50
gb|AAK21344.1|AC024594_8 unknown protein [Oryza sativa (japonica... 141 1e-32
ref|NP_180399.1| unknown protein; protein id: At2g28320.1 [Arabi... 137 2e-31
ref|NP_199369.2| putative protein; protein id: At5g45560.1, supp... 132 7e-30
>ref|NP_568526.1| putative protein; protein id: At5g35180.1, supported by cDNA:
gi_16930704 [Arabidopsis thaliana]
gi|16930705|gb|AAL32018.1|AF436836_1 AT5g35180/T25C13_60
[Arabidopsis thaliana]
Length = 778
Score = 199 bits (505), Expect = 6e-50
Identities = 96/118 (81%), Positives = 111/118 (93%)
Frame = -2
Query: 859 KFVDGSDVFRDSRFKLIPSIVEGYWLVKRAVGTKACLLGKAVTCKYFKQDNFLEIDVDIG 680
KFVDGSD +RD+RFKLIPSIV+GYW+VKRAVGTKACLLGKAVTCKY +QDNFLEIDVDIG
Sbjct: 661 KFVDGSDSYRDARFKLIPSIVQGYWMVKRAVGTKACLLGKAVTCKYLRQDNFLEIDVDIG 720
Query: 679 SSSVARSVINLVLGYVTNLVVDLAILVEAKDEKELPEYILGTVRLNRLKLESAVPLEK 506
SS+VARSVI LVLGYVT+L+VDLAIL+E K+E +LPEYILGTVRLNR++L+SAV E+
Sbjct: 721 SSAVARSVIGLVLGYVTSLIVDLAILIEGKEESDLPEYILGTVRLNRIELDSAVSFEE 778
>dbj|BAA98203.1| emb|CAB77600.1~gene_id:K3D20.2~similar to unknown protein
[Arabidopsis thaliana]
Length = 767
Score = 198 bits (504), Expect = 8e-50
Identities = 96/117 (82%), Positives = 110/117 (93%)
Frame = -2
Query: 859 KFVDGSDVFRDSRFKLIPSIVEGYWLVKRAVGTKACLLGKAVTCKYFKQDNFLEIDVDIG 680
KFVDGSD +RD+RFKLIPSIV+GYW+VKRAVGTKACLLGKAVTCKY +QDNFLEIDVDIG
Sbjct: 650 KFVDGSDSYRDARFKLIPSIVQGYWMVKRAVGTKACLLGKAVTCKYLRQDNFLEIDVDIG 709
Query: 679 SSSVARSVINLVLGYVTNLVVDLAILVEAKDEKELPEYILGTVRLNRLKLESAVPLE 509
SS+VARSVI LVLGYVT+L+VDLAIL+E K+E +LPEYILGTVRLNR++L+SAV E
Sbjct: 710 SSAVARSVIGLVLGYVTSLIVDLAILIEGKEESDLPEYILGTVRLNRIELDSAVSFE 766
>gb|AAK21344.1|AC024594_8 unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 773
Score = 141 bits (355), Expect = 1e-32
Identities = 65/118 (55%), Positives = 93/118 (78%)
Frame = -2
Query: 859 KFVDGSDVFRDSRFKLIPSIVEGYWLVKRAVGTKACLLGKAVTCKYFKQDNFLEIDVDIG 680
+FV+G D FR+SRFKLIP I +G W+VK++VG KACL+G+A+ YF+ N+LE+ VDIG
Sbjct: 655 RFVNGDDAFRNSRFKLIPYISKGSWIVKQSVGKKACLVGQALEINYFRGSNYLELGVDIG 714
Query: 679 SSSVARSVINLVLGYVTNLVVDLAILVEAKDEKELPEYILGTVRLNRLKLESAVPLEK 506
SS+VAR V++LVLGY+ NLV+++A LV+ ++ELPE++LGT RLN L AV +++
Sbjct: 715 SSTVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKAVSIDE 772
>ref|NP_180399.1| unknown protein; protein id: At2g28320.1 [Arabidopsis thaliana]
gi|25407975|pir||D84683 hypothetical protein At2g28320
[imported] - Arabidopsis thaliana
gi|4432844|gb|AAD20693.1| unknown protein [Arabidopsis
thaliana]
Length = 446
Score = 137 bits (346), Expect = 2e-31
Identities = 62/115 (53%), Positives = 89/115 (76%)
Frame = -2
Query: 856 FVDGSDVFRDSRFKLIPSIVEGYWLVKRAVGTKACLLGKAVTCKYFKQDNFLEIDVDIGS 677
FV+G D +R+SRFKLIP I +G W+VK++VG KACL+G+A+ YF+ N++E+ VDIGS
Sbjct: 330 FVNGDDAYRNSRFKLIPYISKGSWIVKQSVGKKACLIGQALEINYFRGKNYIELGVDIGS 389
Query: 676 SSVARSVINLVLGYVTNLVVDLAILVEAKDEKELPEYILGTVRLNRLKLESAVPL 512
S+VAR V++LVLGY+ LV+++A L++A E+ELPEY+LGT R N L A+ +
Sbjct: 390 STVARGVVSLVLGYLNKLVIEMAFLIQANTEEELPEYLLGTCRFNHLDASKAISI 444
>ref|NP_199369.2| putative protein; protein id: At5g45560.1, supported by cDNA:
gi_18086358 [Arabidopsis thaliana]
gi|18086359|gb|AAL57642.1| AT5g45560/MFC19_23
[Arabidopsis thaliana]
Length = 719
Score = 132 bits (332), Expect = 7e-30
Identities = 61/114 (53%), Positives = 88/114 (76%)
Frame = -2
Query: 859 KFVDGSDVFRDSRFKLIPSIVEGYWLVKRAVGTKACLLGKAVTCKYFKQDNFLEIDVDIG 680
+FVDG D FR+SR KLIP + +G W+V+++VG+ CLLGKAV C Y + +LEIDVDIG
Sbjct: 599 RFVDGDDEFRNSRLKLIPLVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPTYLEIDVDIG 658
Query: 679 SSSVARSVINLVLGYVTNLVVDLAILVEAKDEKELPEYILGTVRLNRLKLESAV 518
SS+VA V+ LV+G +T+LVV++A LV+A +ELPE ++G VR++ ++L SA+
Sbjct: 659 SSTVANGVLGLVIGVITSLVVEMAFLVQANTPEELPERLIGAVRVSHVELSSAI 712
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 712,056,235
Number of Sequences: 1393205
Number of extensions: 15405925
Number of successful extensions: 36370
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 34788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36339
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45709790868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
