Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000620A_C01 KMC000620A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190440.1| putative protein; protein id: At3g48710.1, supp... 98 1e-19
gb|AAM61476.1| unknown [Arabidopsis thaliana] 96 3e-19
dbj|BAB90658.1| B1033B05.8 [Oryza sativa (japonica cultivar-group)] 91 1e-17
gb|AAO42170.1| unknown protein [Arabidopsis thaliana] gi|2897314... 91 2e-17
ref|NP_201160.1| putative protein; protein id: At5g63550.1 [Arab... 91 2e-17
>ref|NP_190440.1| putative protein; protein id: At3g48710.1, supported by cDNA:
121300. [Arabidopsis thaliana] gi|11358446|pir||T46215
hypothetical protein T8P19.220 - Arabidopsis thaliana
gi|6523102|emb|CAB62360.1| putative protein [Arabidopsis
thaliana]
Length = 462
Score = 97.8 bits (242), Expect = 1e-19
Identities = 48/64 (75%), Positives = 56/64 (87%)
Frame = -1
Query: 611 ILKEVDFNTATLSDILRPLGTHFGVDLMHRKAEVKDIITDVINNMSDEEDEGEEADGDGD 432
ILKEVDFNTATLSDILR LG+HFG+DLMHRKAEVKDIITD IN MSD++DE EE D + +
Sbjct: 397 ILKEVDFNTATLSDILRKLGSHFGIDLMHRKAEVKDIITDAINEMSDDDDEKEE-DTEDE 455
Query: 431 ADKD 420
+K+
Sbjct: 456 GEKE 459
>gb|AAM61476.1| unknown [Arabidopsis thaliana]
Length = 462
Score = 96.3 bits (238), Expect = 3e-19
Identities = 47/64 (73%), Positives = 56/64 (87%)
Frame = -1
Query: 611 ILKEVDFNTATLSDILRPLGTHFGVDLMHRKAEVKDIITDVINNMSDEEDEGEEADGDGD 432
ILKEVDFNTATLSDILR LG+HFG+DLMHRKAEVKDIITD IN MS+++DE EE D + +
Sbjct: 397 ILKEVDFNTATLSDILRKLGSHFGIDLMHRKAEVKDIITDAINEMSEDDDEKEE-DTEDE 455
Query: 431 ADKD 420
+K+
Sbjct: 456 GEKE 459
>dbj|BAB90658.1| B1033B05.8 [Oryza sativa (japonica cultivar-group)]
Length = 556
Score = 90.9 bits (224), Expect = 1e-17
Identities = 47/73 (64%), Positives = 58/73 (79%)
Frame = -1
Query: 614 DILKEVDFNTATLSDILRPLGTHFGVDLMHRKAEVKDIITDVINNMSDEEDEGEEADGDG 435
DILKEVDFNTATL+DILR LGTHF +DLM RK+EVK II +VIN+MSD+E EGEE + +
Sbjct: 478 DILKEVDFNTATLADILRQLGTHFKMDLMDRKSEVKHIIEEVINSMSDDE-EGEEDNAED 536
Query: 434 DADKDDNGDDDDE 396
D DK+ ++ E
Sbjct: 537 DKDKNAKEENSKE 549
>gb|AAO42170.1| unknown protein [Arabidopsis thaliana] gi|28973147|gb|AAO63898.1|
unknown protein [Arabidopsis thaliana]
Length = 530
Score = 90.5 bits (223), Expect = 2e-17
Identities = 46/75 (61%), Positives = 59/75 (78%), Gaps = 3/75 (4%)
Frame = -1
Query: 611 ILKEVDFNTATLSDILRPLGTHFGVDLMHRKAEVKDIITDVINNMSD--EEDEGEEADGD 438
ILKEVDFNTATLSDIL+ L HFGV+L HRK EVKD+IT+ IN M+D EEDE EEA+
Sbjct: 439 ILKEVDFNTATLSDILQKLSDHFGVELSHRKPEVKDVITEAINAMTDDEEEDEEEEAEAG 498
Query: 437 GDADKDD-NGDDDDE 396
D +K++ G++++E
Sbjct: 499 SDKEKEEVKGEEEEE 513
>ref|NP_201160.1| putative protein; protein id: At5g63550.1 [Arabidopsis thaliana]
Length = 531
Score = 90.5 bits (223), Expect = 2e-17
Identities = 46/75 (61%), Positives = 59/75 (78%), Gaps = 3/75 (4%)
Frame = -1
Query: 611 ILKEVDFNTATLSDILRPLGTHFGVDLMHRKAEVKDIITDVINNMSD--EEDEGEEADGD 438
ILKEVDFNTATLSDIL+ L HFGV+L HRK EVKD+IT+ IN M+D EEDE EEA+
Sbjct: 440 ILKEVDFNTATLSDILQKLSDHFGVELSHRKPEVKDVITEAINAMTDDEEEDEEEEAEAG 499
Query: 437 GDADKDD-NGDDDDE 396
D +K++ G++++E
Sbjct: 500 SDKEKEEVKGEEEEE 514
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,388,032
Number of Sequences: 1393205
Number of extensions: 10037860
Number of successful extensions: 142756
Number of sequences better than 10.0: 1557
Number of HSP's better than 10.0 without gapping: 57411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108300
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
