Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000617A_C01 KMC000617A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM88615.1| putative polyamine oxidase [Oryza sativa (japonic... 45 3e-04
gb|ZP_00105421.1| hypothetical protein [Prochlorococcus marinus ... 35 0.57
ref|NP_701541.1| hypothetical protein [Plasmodium falciparum 3D7... 33 3.7
gb|AAN01258.1| Putative retroelement [Oryza sativa (japonica cul... 33 3.7
sp|Q07422|DRTS_TOXGO BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMID... 32 8.3
>gb|AAM88615.1| putative polyamine oxidase [Oryza sativa (japonica cultivar-group)]
Length = 1862
Score = 44.7 bits (104), Expect(2) = 3e-04
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3
Query: 437 QLVSVWLEVFRMEKASNGGLKLSR 366
QLVSVW+EVFR EKASNGGLKL R
Sbjct: 1395 QLVSVWVEVFRKEKASNGGLKLLR 1418
Score = 20.8 bits (42), Expect(2) = 3e-04
Identities = 18/51 (35%), Positives = 25/51 (48%)
Frame = -1
Query: 598 DLLRSQLFRLFVLCHLQLVGVNT*PLSTLLIKIYDS*IKLLIPHTSRDIRA 446
D L +L C L+ V+T L+ L I + + + HTSRDIRA
Sbjct: 1341 DSLGKNATQLLRHCVRLLLLVSTDLLAVRLSGIGRTVKEKVCVHTSRDIRA 1391
>gb|ZP_00105421.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1378]
Length = 220
Score = 35.4 bits (80), Expect = 0.57
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Frame = -1
Query: 484 KLLIPHTSRDIRATT-ASWLVYGLKSSAWKKHLMGD*SCQDRQAT--VVVILKRKSIEDS 314
+ +I T DI T +S+ V GL S WK G S D QA + + K K I ++
Sbjct: 9 QFVICGTDTDIGKTLISSFFVRGLNSFYWKPIQSGIESETDSQAVARLAKVNKAKIISEA 68
Query: 313 AFGKPPLSPHHSTFENKGGILTHANNSPSIEHVKKLHCKQG--------KLQVENTIMFR 158
+ P+SPH + ++ I N P+I+ + G LQ++ +
Sbjct: 69 YIFREPVSPHWAAEIDQKVINFQLLNLPNIDGSLIVETAGGLMVPITRNYLQIDQIKKWD 128
Query: 157 LPITLGCKHG 128
+P+ L CK G
Sbjct: 129 IPVILICKSG 138
>ref|NP_701541.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496709|gb|AAN36265.1|AE014846_64 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 621
Score = 32.7 bits (73), Expect = 3.7
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = -1
Query: 283 HSTFENKGGILTHANNSPSIEHVKKLHCKQGKLQVENTIMF----RLPITLGCK 134
H T EN I ++ NN+ ++ + K+ + K++ NT+ F ++PITL K
Sbjct: 528 HLTLENHNQIYSNMNNTQKVDDLSKVVLQVHKIKNMNTVKFLNTYKMPITLSFK 581
>gb|AAN01258.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 645
Score = 32.7 bits (73), Expect = 3.7
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = -1
Query: 484 KLLIPHTSRDIRATTASWLVYGLKSSAWKKHLMGD*SCQDRQATVVVILKRKSIEDSAFG 305
+L+ +D + ++ S L KS +WKK LMG +T + IL + S++++
Sbjct: 401 ELVANQVHKDYKCSSLSCLSISQKSGSWKKDLMGSRREPLEPSTFLDILTKPSVKEANDE 460
Query: 304 KPPLSPHHST 275
P++P S+
Sbjct: 461 DSPVTPDISS 470
>sp|Q07422|DRTS_TOXGO BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE (DHFR-TS)
[INCLUDES: DIHYDROFOLATE REDUCTASE ; THYMIDYLATE
SYNTHASE ] gi|422306|pir||A46005 dihydrofolate reductase
(EC 1.5.1.3) / thymidylate synthase (EC 2.1.1.45) -
Toxoplasma gondii gi|295357|gb|AAB00163.1| dihydrofolate
reductase-thymidylate synthase [Toxoplasma gondii]
Length = 610
Score = 31.6 bits (70), Expect = 8.3
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +1
Query: 223 QWKVNYLHELVCLLYSQRYCDVGSGVAFQM 312
Q+ VN EL C++Y QR CDVG GV F +
Sbjct: 494 QFYVNDQKELSCIMY-QRSCDVGLGVPFNI 522
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,411,135
Number of Sequences: 1393205
Number of extensions: 9509360
Number of successful extensions: 18502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18502
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
