Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000615A_C01 KMC000615A_c01
(695 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB64692.1| P0431G06.3 [Oryza sativa (japonica cultivar-group)] 169 4e-41
ref|NP_680129.1| Expressed protein; protein id: At3g54460.1, sup... 162 5e-39
sp|P36607|RAD8_SCHPO DNA repair protein rad8 gi|542223|pir||S414... 64 3e-09
ref|NP_594246.1| helicase; putative DNA repair protein [Schizosa... 63 4e-09
gb|ZP_00080172.1| hypothetical protein [Geobacter metallireducens] 62 6e-09
>dbj|BAB64692.1| P0431G06.3 [Oryza sativa (japonica cultivar-group)]
Length = 1274
Score = 169 bits (427), Expect = 4e-41
Identities = 85/122 (69%), Positives = 100/122 (81%)
Frame = -2
Query: 694 LAMFQHDSSCMVLLMDGSAALGLDLSFVSHVFLMEPIWDRSLEEQVISRAHRMGASRPIH 515
L F+ D +CM L+MDG+AALGLDLSFVS+VFLMEPIWDRS+EEQVISRAHRMGA+RPI
Sbjct: 1145 LTKFKDDPACMALVMDGTAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIF 1204
Query: 514 VETLAMRGTIEEQMLEFLQDADKCRRSPIKDAVKSEDDSGGRGYRSLHDFAGSSYLQKLR 335
VETLAMRGTIEEQML+ LQD++ CR+ + S D+ G R +RSLHDFA SSYL +L
Sbjct: 1205 VETLAMRGTIEEQMLKLLQDSNACRQM-VNKGTSSTDNEGARPHRSLHDFAESSYLAQLS 1263
Query: 334 FV 329
FV
Sbjct: 1264 FV 1265
>ref|NP_680129.1| Expressed protein; protein id: At3g54460.1, supported by cDNA:
gi_20259493 [Arabidopsis thaliana]
gi|11358775|pir||T47605 RING finger-like protein -
Arabidopsis thaliana gi|7258349|emb|CAB77566.1| RING
finger-like protein [Arabidopsis thaliana]
gi|20259494|gb|AAM13867.1| unknown protein [Arabidopsis
thaliana] gi|28393845|gb|AAO42330.1| unknown protein
[Arabidopsis thaliana]
Length = 1378
Score = 162 bits (409), Expect = 5e-39
Identities = 82/127 (64%), Positives = 100/127 (78%)
Frame = -2
Query: 694 LAMFQHDSSCMVLLMDGSAALGLDLSFVSHVFLMEPIWDRSLEEQVISRAHRMGASRPIH 515
LAMFQ+D+ CM LLMDGS ALGLDLSFV+HVFLMEPIWD+SLEEQVISRAHRMGA RPI
Sbjct: 1236 LAMFQNDADCMALLMDGSGALGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIF 1295
Query: 514 VETLAMRGTIEEQMLEFLQDADKCRRSPIKDAVKSEDDSGGRGYRSLHDFAGSSYLQKLR 335
VETL MRGTIEEQM+ FL+DA+K R D ++++ ++ R R+LHD S+YL L
Sbjct: 1296 VETLTMRGTIEEQMMRFLEDAEKSDRLLSGDYIEAKQET-TRSRRTLHDLVESNYLSHLS 1354
Query: 334 FVHTNSE 314
FV ++ +
Sbjct: 1355 FVRSDGK 1361
>sp|P36607|RAD8_SCHPO DNA repair protein rad8 gi|542223|pir||S41478 DNA repair protein rad8
- fission yeast (Schizosaccharomyces pombe)
gi|443973|emb|CAA52686.1| rad8 [Schizosaccharomyces
pombe]
Length = 1133
Score = 63.5 bits (153), Expect = 3e-09
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Frame = -2
Query: 694 LAMFQHDSSCMVLLMDGSAA-LGLDLSFVSHVFLMEPIWDRSLEEQVISRAHRMGASRPI 518
L F++D VL++ A +GL+L+ +HVF+M+P W S+E Q I R HR+G +P+
Sbjct: 1024 LETFRNDPDVNVLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPV 1083
Query: 517 HVETLAMRGTIEEQMLE 467
V +R T+EE+ML+
Sbjct: 1084 FVTRYIVRDTVEERMLK 1100
>ref|NP_594246.1| helicase; putative DNA repair protein [Schizosaccharomyces pombe]
gi|7492537|pir||T37813 probable DNA repair protein -
fission yeast (Schizosaccharomyces pombe)
gi|2414584|emb|CAB16565.1| helicase; putative DNA repair
protein [Schizosaccharomyces pombe]
Length = 897
Score = 62.8 bits (151), Expect = 4e-09
Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Frame = -2
Query: 694 LAMFQHDSSCMVLLMDGSA-ALGLDLSFVSHVFLMEPIWDRSLEEQVISRAHRMGASRPI 518
L F +D +V+L+ A ++GL+L+ +HV L EP ++ S+E+Q I R HR+G +P+
Sbjct: 784 LHSFNNDKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPV 843
Query: 517 HVETLAMRGTIEEQMLEFLQDADKCRRSPIKDAVKSEDDS 398
V + TIEE+++ + +R +K+A+ S +++
Sbjct: 844 TVYRFITKDTIEERIV----SVQRKKRQLVKEALDSNENN 879
>gb|ZP_00080172.1| hypothetical protein [Geobacter metallireducens]
Length = 1149
Score = 62.4 bits (150), Expect = 6e-09
Identities = 36/104 (34%), Positives = 58/104 (55%)
Frame = -2
Query: 676 DSSCMVLLMDGSAALGLDLSFVSHVFLMEPIWDRSLEEQVISRAHRMGASRPIHVETLAM 497
D + LL + GL+L+ ++VF ++P W+ ++E Q RAHR+G +R + + L M
Sbjct: 1046 DEPSVFLLSLKAGGKGLNLTRATYVFHLDPWWNPAVENQASDRAHRIGQTRQVTITRLVM 1105
Query: 496 RGTIEEQMLEFLQDADKCRRSPIKDAVKSEDDSGGRGYRSLHDF 365
R TIEE+M+E K R+ + A+ E+ +G G S DF
Sbjct: 1106 RHTIEEKMMEL-----KKRKLKLYHALLEENSAGDGGGISREDF 1144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,026,267
Number of Sequences: 1393205
Number of extensions: 11171417
Number of successful extensions: 28162
Number of sequences better than 10.0: 600
Number of HSP's better than 10.0 without gapping: 27008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28152
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
