Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000614A_C02 KMC000614A_c02
(671 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB40776.1| histidine kinase [Arabidopsis thaliana] 90 3e-17
dbj|BAB33311.1| cytokinin receptor CRE1b [Arabidopsis thaliana] 90 3e-17
ref|NP_565277.1| putative histidine kinase; protein id: At2g0183... 90 3e-17
dbj|BAB33310.1| cytokinin receptor CRE1a [Arabidopsis thaliana] 90 3e-17
pir||F84429 probable histidine kinase [imported] - Arabidopsis t... 90 3e-17
>dbj|BAB40776.1| histidine kinase [Arabidopsis thaliana]
Length = 1080
Score = 89.7 bits (221), Expect = 3e-17
Identities = 41/54 (75%), Positives = 47/54 (86%)
Frame = -3
Query: 669 FHMPILAMTADVIHATYDKCLNCGMDGYVSKPFEEENLYQAVAKFFKSKPASDS 508
+H+PILAMTADVIHATY++CL GMDGYVSKPFEEENLY++VAK FK P S S
Sbjct: 1026 WHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSFKPNPISPS 1079
>dbj|BAB33311.1| cytokinin receptor CRE1b [Arabidopsis thaliana]
Length = 1080
Score = 89.7 bits (221), Expect = 3e-17
Identities = 41/54 (75%), Positives = 47/54 (86%)
Frame = -3
Query: 669 FHMPILAMTADVIHATYDKCLNCGMDGYVSKPFEEENLYQAVAKFFKSKPASDS 508
+H+PILAMTADVIHATY++CL GMDGYVSKPFEEENLY++VAK FK P S S
Sbjct: 1026 WHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSFKPNPISPS 1079
>ref|NP_565277.1| putative histidine kinase; protein id: At2g01830.1, supported by
cDNA: gi_13359154 [Arabidopsis thaliana]
gi|11595487|emb|CAC18521.1| putative histidine kinase
receptor [Arabidopsis thaliana]
gi|11595489|emb|CAC18522.1| putative histidine kinase
receptor [Arabidopsis thaliana]
gi|11595491|emb|CAC18523.1| putative histidine kinase
receptor [Arabidopsis thaliana]
gi|20198055|gb|AAD21777.2| putative histidine kinase
[Arabidopsis thaliana]
Length = 1057
Score = 89.7 bits (221), Expect = 3e-17
Identities = 41/54 (75%), Positives = 47/54 (86%)
Frame = -3
Query: 669 FHMPILAMTADVIHATYDKCLNCGMDGYVSKPFEEENLYQAVAKFFKSKPASDS 508
+H+PILAMTADVIHATY++CL GMDGYVSKPFEEENLY++VAK FK P S S
Sbjct: 1003 WHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSFKPNPISPS 1056
>dbj|BAB33310.1| cytokinin receptor CRE1a [Arabidopsis thaliana]
Length = 1057
Score = 89.7 bits (221), Expect = 3e-17
Identities = 41/54 (75%), Positives = 47/54 (86%)
Frame = -3
Query: 669 FHMPILAMTADVIHATYDKCLNCGMDGYVSKPFEEENLYQAVAKFFKSKPASDS 508
+H+PILAMTADVIHATY++CL GMDGYVSKPFEEENLY++VAK FK P S S
Sbjct: 1003 WHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSFKPNPISPS 1056
>pir||F84429 probable histidine kinase [imported] - Arabidopsis thaliana
Length = 600
Score = 89.7 bits (221), Expect = 3e-17
Identities = 41/54 (75%), Positives = 47/54 (86%)
Frame = -3
Query: 669 FHMPILAMTADVIHATYDKCLNCGMDGYVSKPFEEENLYQAVAKFFKSKPASDS 508
+H+PILAMTADVIHATY++CL GMDGYVSKPFEEENLY++VAK FK P S S
Sbjct: 524 WHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEENLYKSVAKSFKPNPISPS 577
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,859,667
Number of Sequences: 1393205
Number of extensions: 11419659
Number of successful extensions: 29761
Number of sequences better than 10.0: 361
Number of HSP's better than 10.0 without gapping: 28832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29747
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
