Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000612A_C01 KMC000612A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200187.1| putative protein; protein id: At5g53760.1, supp... 74 8e-13
ref|NP_564257.1| Mlo protein, putative; protein id: At1g26700.1,... 61 9e-09
pir||H86393 protein T24P13.8 [imported] - Arabidopsis thaliana g... 61 9e-09
gb|AAB34628.1| SAP-2=ERP/NET homolog [human, placenta, Peptide, ... 37 0.15
ref|NP_005221.1| ELK3 protein; SRF accessory protein 2; ETS-doma... 37 0.19
>ref|NP_200187.1| putative protein; protein id: At5g53760.1, supported by cDNA:
gi_14091591, supported by cDNA: gi_15982790 [Arabidopsis
thaliana] gi|9759070|dbj|BAB09548.1| contains similarity
to salt-stress responding gene product~gene_id:MGN6.12
[Arabidopsis thaliana]
gi|14091592|gb|AAK53804.1|AF369572_1 membrane protein
Mlo11 [Arabidopsis thaliana] gi|15982791|gb|AAL09743.1|
AT5g53760/MGN6_12 [Arabidopsis thaliana]
gi|23306368|gb|AAN17411.1| putative protein [Arabidopsis
thaliana] gi|27311951|gb|AAO00941.1| putative protein
[Arabidopsis thaliana]
Length = 573
Score = 74.3 bits (181), Expect = 8e-13
Identities = 49/112 (43%), Positives = 66/112 (58%), Gaps = 14/112 (12%)
Frame = -3
Query: 529 RKRRHGLFPDDSTIHTDTSTVLYIED-DDRLVDTT---------GELATVTEVELQPVTT 380
RKRRHGL+ DDST+ T+TST+ +E+ D +++D T + TE+ELQP+
Sbjct: 461 RKRRHGLYGDDSTVRTETSTIASLEEYDHQVLDVTETSFEQQRKQQEQGTTELELQPIQP 520
Query: 379 VTSTPSPIANETSSRVVTPLLRPSASISSSAPF----SSRIEVVPRSSSMPS 236
+ N+TSSRV TPLLRP SISS S +E + RSSS+PS
Sbjct: 521 RNDC---VPNDTSSRVGTPLLRPWLSISSPTTTIELRSEPMETLSRSSSLPS 569
>ref|NP_564257.1| Mlo protein, putative; protein id: At1g26700.1, supported by cDNA:
gi_14091597 [Arabidopsis thaliana]
gi|14091598|gb|AAK53807.1|AF369575_1 membrane protein
Mlo14 [Arabidopsis thaliana]
Length = 554
Score = 60.8 bits (146), Expect = 9e-09
Identities = 45/107 (42%), Positives = 61/107 (56%), Gaps = 7/107 (6%)
Frame = -3
Query: 529 RKRRHGLFPDDSTIHTDTSTVLYIEDDDRLVDTTGELATV--TEVELQPVTTVTSTPSPI 356
RKRRHGL+ DDSTI T+TST+ +++ + V E + V E+ELQ +
Sbjct: 456 RKRRHGLYGDDSTIRTETSTIASVDEYNDQVLDVSETSPVQDNELELQLIRG-------- 507
Query: 355 ANETSSRVVTPLLRPSASISSSAPFSSRIEV-----VPRSSSMPSGR 230
A SS V TP+LRP ASISS+ SR++ + RSSS+P R
Sbjct: 508 ACGNSSSVETPILRPCASISSTT--FSRLQTETTDSLSRSSSLPMRR 552
>pir||H86393 protein T24P13.8 [imported] - Arabidopsis thaliana
gi|9295722|gb|AAF87028.1|AC006535_6 T24P13.8
[Arabidopsis thaliana]
Length = 507
Score = 60.8 bits (146), Expect = 9e-09
Identities = 45/107 (42%), Positives = 61/107 (56%), Gaps = 7/107 (6%)
Frame = -3
Query: 529 RKRRHGLFPDDSTIHTDTSTVLYIEDDDRLVDTTGELATV--TEVELQPVTTVTSTPSPI 356
RKRRHGL+ DDSTI T+TST+ +++ + V E + V E+ELQ +
Sbjct: 409 RKRRHGLYGDDSTIRTETSTIASVDEYNDQVLDVSETSPVQDNELELQLIRG-------- 460
Query: 355 ANETSSRVVTPLLRPSASISSSAPFSSRIEV-----VPRSSSMPSGR 230
A SS V TP+LRP ASISS+ SR++ + RSSS+P R
Sbjct: 461 ACGNSSSVETPILRPCASISSTT--FSRLQTETTDSLSRSSSLPMRR 505
>gb|AAB34628.1| SAP-2=ERP/NET homolog [human, placenta, Peptide, 407 aa]
gi|16924204|gb|AAH17371.1|AAH17371 Unknown (protein for
MGC:13551) [Homo sapiens]
Length = 407
Score = 37.0 bits (84), Expect = 0.15
Identities = 25/90 (27%), Positives = 47/90 (51%)
Frame = -3
Query: 505 PDDSTIHTDTSTVLYIEDDDRLVDTTGELATVTEVELQPVTTVTSTPSPIANETSSRVVT 326
P+DS + TV+ + + T + T V L + + + +A+ S+++ +
Sbjct: 170 PEDSPPVEEVRTVIRF-----VTNKTDKHVTRPVVSLPSTSEAAAASAFLASSVSAKISS 224
Query: 325 PLLRPSASISSSAPFSSRIEVVPRSSSMPS 236
+L +ASISS++PFSSR + +S +PS
Sbjct: 225 LMLPNAASISSASPFSSRSPSLSPNSPLPS 254
>ref|NP_005221.1| ELK3 protein; SRF accessory protein 2; ETS-domain protein [Homo
sapiens] gi|1171688|sp|P41970|ELK3_HUMAN ETS-domain
protein ELK-3 (ETS-related protein NET) (ETS-related
protein ERP) (SRF accessory protein 2) (SAP-2)
gi|2135801|pir||I38062 transcription factor ELK3 - human
gi|531523|emb|CAA85309.1| Net [Homo sapiens]
Length = 407
Score = 36.6 bits (83), Expect = 0.19
Identities = 25/90 (27%), Positives = 46/90 (50%)
Frame = -3
Query: 505 PDDSTIHTDTSTVLYIEDDDRLVDTTGELATVTEVELQPVTTVTSTPSPIANETSSRVVT 326
P+DS + TV+ + + T + T V L + + + +A+ S+++ +
Sbjct: 170 PEDSPPVEEVRTVIRF-----VTNKTDKHVTRPVVSLPSTSEAAAASAFLASSVSAKISS 224
Query: 325 PLLRPSASISSSAPFSSRIEVVPRSSSMPS 236
+L +ASISS++PFSSR + S +PS
Sbjct: 225 LMLPNAASISSASPFSSRSPSLSPKSPLPS 254
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,904,270
Number of Sequences: 1393205
Number of extensions: 9695663
Number of successful extensions: 33326
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 30024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32829
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
