Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000610A_C02 KMC000610A_c02
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567538.1| trehalose-6-phosphate synthase like protein; pr... 72 7e-12
pir||H71447 trehalose-6-phosphate synthase homolog DL4920W - Ara... 72 7e-12
gb|AAN52740.1| Putative trehalose-6-phosphate synthase [Oryza sa... 70 3e-11
pir||C96703 hypothetical protein T23K23.13 [imported] - Arabidop... 65 1e-09
ref|NP_172129.1| trehalose-6-phosphate synthase, putative; prote... 57 2e-07
>ref|NP_567538.1| trehalose-6-phosphate synthase like protein; protein id:
At4g17770.1, supported by cDNA: 95947. [Arabidopsis
thaliana] gi|26452424|dbj|BAC43297.1| putative
trehalose-6-phosphate synthase [Arabidopsis thaliana]
gi|29029046|gb|AAO64902.1| At4g17770 [Arabidopsis
thaliana]
Length = 862
Score = 72.0 bits (175), Expect = 7e-12
Identities = 36/50 (72%), Positives = 42/50 (84%), Gaps = 2/50 (4%)
Frame = -2
Query: 654 MFEVITSAK--ASLSPVAEVFPCAVGQKPSKAKYYLEDPSEILRMLQGLS 511
MFEVI SAK +LSPVAE+F C VGQKPSKAKYYL+D +EI+RML GL+
Sbjct: 791 MFEVIMSAKDGPALSPVAEIFACTVGQKPSKAKYYLDDTAEIIRMLDGLA 840
>pir||H71447 trehalose-6-phosphate synthase homolog DL4920W - Arabidopsis
thaliana gi|2245136|emb|CAB10557.1|
trehalose-6-phosphate synthase like protein [Arabidopsis
thaliana] gi|7268530|emb|CAB78780.1|
trehalose-6-phosphate synthase like protein [Arabidopsis
thaliana]
Length = 865
Score = 72.0 bits (175), Expect = 7e-12
Identities = 36/50 (72%), Positives = 42/50 (84%), Gaps = 2/50 (4%)
Frame = -2
Query: 654 MFEVITSAK--ASLSPVAEVFPCAVGQKPSKAKYYLEDPSEILRMLQGLS 511
MFEVI SAK +LSPVAE+F C VGQKPSKAKYYL+D +EI+RML GL+
Sbjct: 794 MFEVIMSAKDGPALSPVAEIFACTVGQKPSKAKYYLDDTAEIIRMLDGLA 843
>gb|AAN52740.1| Putative trehalose-6-phosphate synthase [Oryza sativa (japonica
cultivar-group)]
Length = 860
Score = 69.7 bits (169), Expect = 3e-11
Identities = 33/61 (54%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Frame = -2
Query: 654 MFEVITSAKA--SLSPVAEVFPCAVGQKPSKAKYYLEDPSEILRMLQGLSNASEKSARSS 481
MF++ITS+ SL+ AEVF C VG+KPSKAKYYL+D +E++R++QGL++ S + AR++
Sbjct: 793 MFQMITSSTCGESLAATAEVFACTVGRKPSKAKYYLDDTAEVVRLMQGLASVSNELARAA 852
Query: 480 S 478
S
Sbjct: 853 S 853
>pir||C96703 hypothetical protein T23K23.13 [imported] - Arabidopsis thaliana
gi|12324075|gb|AAG52003.1|AC012563_13 putative
trehalose-6-phosphate synthase; 46897-44149 [Arabidopsis
thaliana]
Length = 847
Score = 64.7 bits (156), Expect = 1e-09
Identities = 30/55 (54%), Positives = 44/55 (79%), Gaps = 2/55 (3%)
Frame = -2
Query: 654 MFEVITSAKA--SLSPVAEVFPCAVGQKPSKAKYYLEDPSEILRMLQGLSNASEK 496
MFEVI S+ S++P AE+F C VGQKPSKAKYYL+D +EI+R++ GL++ +++
Sbjct: 789 MFEVICSSTEGPSIAPRAEIFACTVGQKPSKAKYYLDDTTEIVRLMHGLASVTDQ 843
>ref|NP_172129.1| trehalose-6-phosphate synthase, putative; protein id: At1g06410.1
[Arabidopsis thaliana] gi|25347117|pir||A86200
hypothetical protein [imported] - Arabidopsis thaliana
gi|8927678|gb|AAF82169.1|AC068143_11 Contains similarity
to a trehalose-6-phosphate synthase mRNA from
Arabidopsis thaliana gb|Y08568 and contains a
trehalose-6-phosphate synthase PF|00982 domain. ESTs
gb|T76758, gb|T21695, gb|R30506, gb|T42298, gb|T42288
come from this gene
Length = 851
Score = 57.4 bits (137), Expect = 2e-07
Identities = 32/56 (57%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Frame = -2
Query: 654 MFEVITSA--KASLSPVAEVFPCAVGQKPSKAKYYLEDPSEILRMLQGLSNASEKS 493
MFE I +A K L A VF C VGQKPSKAKYYL+D +E+ ML+ L+ ASE S
Sbjct: 785 MFEAIGNAMSKRLLCDNALVFACTVGQKPSKAKYYLDDTTEVTCMLESLAEASEAS 840
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,545,972
Number of Sequences: 1393205
Number of extensions: 9989136
Number of successful extensions: 22094
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22091
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
