Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000607A_C01 KMC000607A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD59411.1| SMC3 protein [Oryza sativa] 103 2e-21
emb|CAD43403.2| SMC3 protein [Arabidopsis thaliana] 92 5e-18
ref|NP_180285.1| putative chromosome associated protein; protein... 92 5e-18
pir||F84669 probable chromosome associated protein [imported] - ... 92 5e-18
gb|AAM15423.1| putative chromosome associated protein [Arabidops... 92 5e-18
>emb|CAD59411.1| SMC3 protein [Oryza sativa]
Length = 1205
Score = 103 bits (256), Expect = 2e-21
Identities = 49/62 (79%), Positives = 56/62 (90%)
Frame = -1
Query: 512 NMIRRLXDIANTQFITTTFRQELVKVADKIYGVTHKNRVSRVNVVSKETALEFIEHDQTH 333
++IRRL D+A+TQFI TTFR E+ KVADKIYGVTHKNRVS +NVVSKE AL+FIEHDQTH
Sbjct: 1143 SIIRRLADMADTQFIATTFRPEIAKVADKIYGVTHKNRVSYINVVSKEQALDFIEHDQTH 1202
Query: 332 NA 327
NA
Sbjct: 1203 NA 1204
>emb|CAD43403.2| SMC3 protein [Arabidopsis thaliana]
Length = 1205
Score = 91.7 bits (226), Expect = 5e-18
Identities = 45/61 (73%), Positives = 52/61 (84%)
Frame = -1
Query: 512 NMIRRLXDIANTQFITTTFRQELVKVADKIYGVTHKNRVSRVNVVSKETALEFIEHDQTH 333
N+IRRL D TQFITTTFR ELV+VADKIYGV HKNRVS VNV+SK+ AL+FIE DQ+H
Sbjct: 1144 NLIRRLADDYGTQFITTTFRPELVRVADKIYGVFHKNRVSIVNVISKDQALDFIEKDQSH 1203
Query: 332 N 330
+
Sbjct: 1204 D 1204
>ref|NP_180285.1| putative chromosome associated protein; protein id: At2g27170.1
[Arabidopsis thaliana]
Length = 1200
Score = 91.7 bits (226), Expect = 5e-18
Identities = 45/61 (73%), Positives = 52/61 (84%)
Frame = -1
Query: 512 NMIRRLXDIANTQFITTTFRQELVKVADKIYGVTHKNRVSRVNVVSKETALEFIEHDQTH 333
N+IRRL D TQFITTTFR ELV+VADKIYGV HKNRVS VNV+SK+ AL+FIE DQ+H
Sbjct: 1139 NLIRRLADDYGTQFITTTFRPELVRVADKIYGVFHKNRVSIVNVISKDQALDFIEKDQSH 1198
Query: 332 N 330
+
Sbjct: 1199 D 1199
>pir||F84669 probable chromosome associated protein [imported] - Arabidopsis
thaliana
Length = 1163
Score = 91.7 bits (226), Expect = 5e-18
Identities = 45/61 (73%), Positives = 52/61 (84%)
Frame = -1
Query: 512 NMIRRLXDIANTQFITTTFRQELVKVADKIYGVTHKNRVSRVNVVSKETALEFIEHDQTH 333
N+IRRL D TQFITTTFR ELV+VADKIYGV HKNRVS VNV+SK+ AL+FIE DQ+H
Sbjct: 1102 NLIRRLADDYGTQFITTTFRPELVRVADKIYGVFHKNRVSIVNVISKDQALDFIEKDQSH 1161
Query: 332 N 330
+
Sbjct: 1162 D 1162
>gb|AAM15423.1| putative chromosome associated protein [Arabidopsis thaliana]
Length = 1175
Score = 91.7 bits (226), Expect = 5e-18
Identities = 45/61 (73%), Positives = 52/61 (84%)
Frame = -1
Query: 512 NMIRRLXDIANTQFITTTFRQELVKVADKIYGVTHKNRVSRVNVVSKETALEFIEHDQTH 333
N+IRRL D TQFITTTFR ELV+VADKIYGV HKNRVS VNV+SK+ AL+FIE DQ+H
Sbjct: 1114 NLIRRLADDYGTQFITTTFRPELVRVADKIYGVFHKNRVSIVNVISKDQALDFIEKDQSH 1173
Query: 332 N 330
+
Sbjct: 1174 D 1174
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,427,046
Number of Sequences: 1393205
Number of extensions: 7582836
Number of successful extensions: 14613
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 14344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14609
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
