Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000604A_C01 KMC000604A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177940.2| pumilio-family RNA-binding protein, putative; p... 69 5e-11
ref|NP_173643.1| pumilio-family RNA-binding protein, putative; p... 62 6e-09
pir||B86355 F16L1.3 protein - Arabidopsis thaliana gi|9454526|gb... 62 6e-09
pir||F86479 hypothetical protein F14D7.5 [imported] - Arabidopsi... 58 7e-08
ref|NP_174813.1| pumilio-family RNA-binding protein, putative; p... 58 7e-08
>ref|NP_177940.2| pumilio-family RNA-binding protein, putative; protein id:
At1g78160.1 [Arabidopsis thaliana]
Length = 650
Score = 68.6 bits (166), Expect = 5e-11
Identities = 34/57 (59%), Positives = 45/57 (78%)
Frame = -2
Query: 567 FAQLLQDPHANYVVQSALKHSEGDVHNSLVEAIESHKAISRNSPYSKKIFSQKLLKK 397
F QLLQDP+AN+V+Q+AL ++G +H SLVE I H +I RN+PY K+IFS+ LLKK
Sbjct: 595 FDQLLQDPYANFVIQAALAATKGPLHASLVEVIRPH-SILRNNPYCKRIFSRNLLKK 650
>ref|NP_173643.1| pumilio-family RNA-binding protein, putative; protein id:
At1g22240.1 [Arabidopsis thaliana]
Length = 515
Score = 61.6 bits (148), Expect = 6e-09
Identities = 30/56 (53%), Positives = 43/56 (76%)
Frame = -2
Query: 567 FAQLLQDPHANYVVQSALKHSEGDVHNSLVEAIESHKAISRNSPYSKKIFSQKLLK 400
F L+QDP+AN+V+Q+AL ++G +H +LVE I H +I RN+PY K+IFS+ LLK
Sbjct: 460 FDILIQDPYANFVIQAALAVTKGSLHATLVEVIRPH-SILRNNPYCKRIFSRNLLK 514
>pir||B86355 F16L1.3 protein - Arabidopsis thaliana
gi|9454526|gb|AAF87849.1|AC073942_3 Contains similarity
to RNA binding protein PufA from Dictyostelium
discoideum gi|5106561 and contains multiple
Pumilio-family RNA binding PF|00806 domains.
[Arabidopsis thaliana]
Length = 514
Score = 61.6 bits (148), Expect = 6e-09
Identities = 30/56 (53%), Positives = 43/56 (76%)
Frame = -2
Query: 567 FAQLLQDPHANYVVQSALKHSEGDVHNSLVEAIESHKAISRNSPYSKKIFSQKLLK 400
F L+QDP+AN+V+Q+AL ++G +H +LVE I H +I RN+PY K+IFS+ LLK
Sbjct: 459 FDILIQDPYANFVIQAALAVTKGSLHATLVEVIRPH-SILRNNPYCKRIFSRNLLK 513
>pir||F86479 hypothetical protein F14D7.5 [imported] - Arabidopsis thaliana
gi|8778970|gb|AAF79885.1|AC021198_5 Contains similarity
to a putative RNA-binding protein AAF18550 gi|6587864
from Arabidopsis thaliana BAC T11I11 gb|AC012680. It
contains Pumilio-family RNA binding domains PF|00806
Length = 559
Score = 58.2 bits (139), Expect = 7e-08
Identities = 30/57 (52%), Positives = 40/57 (69%)
Frame = -2
Query: 567 FAQLLQDPHANYVVQSALKHSEGDVHNSLVEAIESHKAISRNSPYSKKIFSQKLLKK 397
F QLLQDP+ANYV+Q+AL ++G V LVE ++ + N PY KKIFS+ +LKK
Sbjct: 504 FEQLLQDPYANYVIQTALSVTKGAVRARLVEKVKRFGKLQSN-PYCKKIFSKTILKK 559
>ref|NP_174813.1| pumilio-family RNA-binding protein, putative; protein id:
At1g35750.1 [Arabidopsis thaliana]
Length = 528
Score = 58.2 bits (139), Expect = 7e-08
Identities = 30/57 (52%), Positives = 40/57 (69%)
Frame = -2
Query: 567 FAQLLQDPHANYVVQSALKHSEGDVHNSLVEAIESHKAISRNSPYSKKIFSQKLLKK 397
F QLLQDP+ANYV+Q+AL ++G V LVE ++ + N PY KKIFS+ +LKK
Sbjct: 473 FEQLLQDPYANYVIQTALSVTKGAVRARLVEKVKRFGKLQSN-PYCKKIFSKTILKK 528
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,457,656
Number of Sequences: 1393205
Number of extensions: 9438898
Number of successful extensions: 22818
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 22016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22785
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
