Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000601A_C01 KMC000601A_c01
(478 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM44081.1| type IIB calcium ATPase MCA5 [Medicago truncatula] 125 3e-28
gb|AAG28435.1|AF195028_1 plasma membrane Ca2+-ATPase [Glycine max] 124 7e-28
ref|NP_179879.1| potential calcium-transporting ATPase 7, plasma... 115 3e-25
gb|AAF18608.2| hypothetical protein [Arabidopsis thaliana] 115 3e-25
ref|NP_195479.1| calcium-transporting ATPase 2, plasma membrane-... 110 6e-24
>gb|AAM44081.1| type IIB calcium ATPase MCA5 [Medicago truncatula]
Length = 1014
Score = 125 bits (313), Expect = 3e-28
Identities = 60/73 (82%), Positives = 65/73 (88%)
Frame = -1
Query: 478 SREMEKINVLNGILENYVFVAVLSATALFQIIIVEYMGTFANTTPLTLVQWFFCLVVGFL 299
SREMEKINV GIL+NYVFV V+SAT FQIIIVEY+GTFANTTPLTLVQWFFCL VGF+
Sbjct: 942 SREMEKINVFKGILDNYVFVGVISATIFFQIIIVEYLGTFANTTPLTLVQWFFCLFVGFM 1001
Query: 298 GMPIAAGIKMIPV 260
GMPIAA +K IPV
Sbjct: 1002 GMPIAARLKKIPV 1014
>gb|AAG28435.1|AF195028_1 plasma membrane Ca2+-ATPase [Glycine max]
Length = 1014
Score = 124 bits (310), Expect = 7e-28
Identities = 59/73 (80%), Positives = 65/73 (88%)
Frame = -1
Query: 478 SREMEKINVLNGILENYVFVAVLSATALFQIIIVEYMGTFANTTPLTLVQWFFCLVVGFL 299
SREMEKINV GIL+NYVFV V+SAT FQIIIVEY+GTFANTTPLTL QWFFCL+VGF+
Sbjct: 942 SREMEKINVFKGILDNYVFVGVISATVFFQIIIVEYLGTFANTTPLTLSQWFFCLLVGFM 1001
Query: 298 GMPIAAGIKMIPV 260
GMPIAA +K IPV
Sbjct: 1002 GMPIAARLKKIPV 1014
>ref|NP_179879.1| potential calcium-transporting ATPase 7, plasma membrane-type
(Ca2+-ATPase, isoform 7); protein id: At2g22950.1
[Arabidopsis thaliana] gi|12229638|sp|O64806|ACA7_ARATH
Potential calcium-transporting ATPase 7, plasma
membrane-type (Ca2+-ATPase, isoform 7)
gi|25290669|pir||H84618 probable Ca2+-ATPase [imported] -
Arabidopsis thaliana gi|20197272|gb|AAM15005.1| putative
Ca2+-ATPase [Arabidopsis thaliana]
Length = 1015
Score = 115 bits (287), Expect = 3e-25
Identities = 53/73 (72%), Positives = 64/73 (87%)
Frame = -1
Query: 478 SREMEKINVLNGILENYVFVAVLSATALFQIIIVEYMGTFANTTPLTLVQWFFCLVVGFL 299
SREME+I+V GIL+NYVFV V+ AT FQIII+E++GTFA+TTPLT+VQWFF + VGFL
Sbjct: 943 SREMEEIDVFKGILDNYVFVVVIGATVFFQIIIIEFLGTFASTTPLTIVQWFFSIFVGFL 1002
Query: 298 GMPIAAGIKMIPV 260
GMPIAAG+K IPV
Sbjct: 1003 GMPIAAGLKKIPV 1015
>gb|AAF18608.2| hypothetical protein [Arabidopsis thaliana]
Length = 319
Score = 115 bits (287), Expect = 3e-25
Identities = 53/73 (72%), Positives = 64/73 (87%)
Frame = -1
Query: 478 SREMEKINVLNGILENYVFVAVLSATALFQIIIVEYMGTFANTTPLTLVQWFFCLVVGFL 299
SREME+I+V GIL+NYVFV V+ AT FQIII+E++GTFA+TTPLT+VQWFF + VGFL
Sbjct: 247 SREMEEIDVFKGILDNYVFVVVIGATVFFQIIIIEFLGTFASTTPLTIVQWFFSIFVGFL 306
Query: 298 GMPIAAGIKMIPV 260
GMPIAAG+K IPV
Sbjct: 307 GMPIAAGLKKIPV 319
>ref|NP_195479.1| calcium-transporting ATPase 2, plasma membrane-type (Ca2+-ATPase,
isoform 2); protein id: At4g37640.1, supported by cDNA:
gi_17064815, supported by cDNA: gi_3335059 [Arabidopsis
thaliana] gi|12229639|sp|O81108|ACA2_ARATH
Calcium-transporting ATPase 2, plasma membrane-type
(Ca2+-ATPase, isoform 2) gi|7436361|pir||T04721
Ca2+-transporting ATPase (EC 3.6.3.8) ACA2,
calmodulin-regulated [validated] - Arabidopsis thaliana
gi|3335060|gb|AAC26997.1| plasma membrane-type calcium
ATPase [Arabidopsis thaliana] gi|4468989|emb|CAB38303.1|
plasma membrane-type calcium ATPase (ACA2) [Arabidopsis
thaliana] gi|7270746|emb|CAB80429.1| plasma membrane-type
calcium ATPase (ACA2) [Arabidopsis thaliana]
gi|17064816|gb|AAL32562.1| plasma membrane-type calcium
ATPase (ACA2) [Arabidopsis thaliana]
Length = 1014
Score = 110 bits (276), Expect = 6e-24
Identities = 50/73 (68%), Positives = 62/73 (84%)
Frame = -1
Query: 478 SREMEKINVLNGILENYVFVAVLSATALFQIIIVEYMGTFANTTPLTLVQWFFCLVVGFL 299
SREME+I+V GIL+NYVFV V+ AT FQIII+E++GTFA+TTPLT+ QW F + +GFL
Sbjct: 942 SREMEEIDVFKGILDNYVFVVVIGATVFFQIIIIEFLGTFASTTPLTITQWIFSIFIGFL 1001
Query: 298 GMPIAAGIKMIPV 260
GMPIAAG+K IPV
Sbjct: 1002 GMPIAAGLKTIPV 1014
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,406,197
Number of Sequences: 1393205
Number of extensions: 8300755
Number of successful extensions: 17219
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 16855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17201
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
