Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000599A_C01 KMC000599A_c01
(620 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190414.1| putative protein; protein id: At3g48440.1 [Arab... 119 2e-26
ref|NP_201131.1| putative protein; protein id: At5g63260.1 [Arab... 106 2e-22
dbj|BAB86142.1| putative zinc finger protein [Oryza sativa (japo... 97 2e-19
gb|AAM61197.1| zinc finger protein 3 [Arabidopsis thaliana] 96 3e-19
ref|NP_680170.1| zinc finger protein 3 (gb|AAD27875.1); protein ... 96 3e-19
>ref|NP_190414.1| putative protein; protein id: At3g48440.1 [Arabidopsis thaliana]
gi|7487535|pir||T06698 hypothetical protein T29H11.40 -
Arabidopsis thaliana gi|4678344|emb|CAB41154.1| putative
protein [Arabidopsis thaliana]
Length = 448
Score = 119 bits (299), Expect = 2e-26
Identities = 47/64 (73%), Positives = 57/64 (88%)
Frame = -3
Query: 618 TGACKFKSNCKFHHPRNRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDH 439
TG CKFK NCK+HHP+NR+ +LPP L+DKGLPLRPDQN+C++YSRYGICKFGPACR+DH
Sbjct: 358 TGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRFDH 417
Query: 438 PIDP 427
+ P
Sbjct: 418 SVQP 421
Score = 61.6 bits (148), Expect = 8e-09
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Frame = -3
Query: 618 TGACKFKSNCKFHH--PRNRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRY 445
TG CK+ C+F+H P++ +A P L+ GLPLRP + C +Y R G CK+G C++
Sbjct: 170 TGGCKYGETCRFNHTIPKSGLASAPE--LNFLGLPLRPGEVECPYYMRNGSCKYGAECKF 227
Query: 444 DHPIDPLPV 418
+HP DP +
Sbjct: 228 NHP-DPTTI 235
Score = 50.1 bits (118), Expect = 2e-05
Identities = 31/84 (36%), Positives = 41/84 (47%), Gaps = 6/84 (7%)
Frame = -3
Query: 618 TGACKFKSNCKFHHPRNRVARLPPCILSDKGLPLRPDQN------VCSHYSRYGICKFGP 457
TG+CKF S+CKF+HP R + I D + + D C +Y R G CK+G
Sbjct: 122 TGSCKFGSSCKFNHPLARKFQ----IARDNKVREKEDDGGKLGLIDCKYYFRTGGCKYGE 177
Query: 456 ACRYDHPIDPLPVMMPGLGLQSYP 385
CR++H I P GL S P
Sbjct: 178 TCRFNHTI-------PKSGLASAP 194
Score = 44.3 bits (103), Expect = 0.001
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -3
Query: 522 PLRPDQNVCSHYSRYGICKFGPACRYDHPIDPLPVMMP 409
P RPDQ CS+Y + G CKF C+Y HP + LP + P
Sbjct: 344 PERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPP 381
Score = 43.1 bits (100), Expect = 0.003
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3
Query: 537 SDKGLPLRPDQNVCSHYSRYGICKFGPACRYDHPI 433
S+ P+RP CS Y R G CKFG +C+++HP+
Sbjct: 103 SENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPL 137
>ref|NP_201131.1| putative protein; protein id: At5g63260.1 [Arabidopsis thaliana]
gi|10177307|dbj|BAB10568.1| contains similarity to zinc
finger protein~gene_id:MDC12.23 [Arabidopsis thaliana]
Length = 435
Score = 106 bits (265), Expect = 2e-22
Identities = 43/64 (67%), Positives = 52/64 (81%)
Frame = -3
Query: 618 TGACKFKSNCKFHHPRNRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDH 439
TG CKFK CK+HHP+NR+ + +DKGLPLRPDQ++C+HYSRYGICKFGPACR+DH
Sbjct: 346 TGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRFDH 405
Query: 438 PIDP 427
I P
Sbjct: 406 SIPP 409
Score = 59.7 bits (143), Expect = 3e-08
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = -3
Query: 618 TGACKFKSNCKFHHPR--NRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRY 445
TG CK+ +C+F H + N A +P L+ GLP+RP + C Y R G CKFG C++
Sbjct: 160 TGGCKYGESCRFSHMKEHNSPASVPE--LNFLGLPIRPGEKECPFYMRNGSCKFGSDCKF 217
Query: 444 DHPIDPLPV 418
+HP DP +
Sbjct: 218 NHP-DPTAI 225
Score = 49.7 bits (117), Expect = 3e-05
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = -3
Query: 618 TGACKFKSNCKFHHPRNRVARLPPCILSDKGLPL-RPDQNVCSHYSRYGICKFGPACRYD 442
TG+CK+ S+CKF+HP R ++ + ++ + P C +Y R G CK+G +CR+
Sbjct: 113 TGSCKYGSSCKFNHPVRRKLQIGRERVRERDEDVENPKLMECKYYFRTGGCKYGESCRFS 172
Query: 441 HPID-PLPVMMPGLGLQSYP 385
H + P +P L P
Sbjct: 173 HMKEHNSPASVPELNFLGLP 192
Score = 44.7 bits (104), Expect = 0.001
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = -3
Query: 522 PLRPDQNVCSHYSRYGICKFGPACRYDHPI 433
P+RPD CS Y R G CK+G +C+++HP+
Sbjct: 99 PVRPDSEDCSFYMRTGSCKYGSSCKFNHPV 128
Score = 42.4 bits (98), Expect = 0.005
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -3
Query: 540 LSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDHPIDPLP 421
+S + P RPDQ C++Y + G CKF C+Y HP + LP
Sbjct: 326 MSVEEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLP 365
>dbj|BAB86142.1| putative zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 420
Score = 96.7 bits (239), Expect = 2e-19
Identities = 51/102 (50%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Frame = -3
Query: 618 TGACKFKSNCKFHHPRNRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDH 439
TG CKF + CKFHHPR R P C+LS GLPLRP + +C YSRYGICKFG C++DH
Sbjct: 300 TGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDH 359
Query: 438 PIDPLPVMMPGLGLQSYPN-SADVEM-AGLGGSA----GASD 331
P M P +G+ +Y + S +V M G+G S GA D
Sbjct: 360 -----PTMAPPMGVYAYGSASTNVPMIVGIGFSGSWQQGAKD 396
Score = 69.7 bits (169), Expect = 3e-11
Identities = 33/87 (37%), Positives = 44/87 (49%)
Frame = -3
Query: 618 TGACKFKSNCKFHHPRNRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDH 439
TG CKF CKFHHPR + L+ G PLRP + C++Y + G CK+G C++ H
Sbjct: 93 TGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHH 152
Query: 438 PIDPLPVMMPGLGLQSYPNSADVEMAG 358
P + M G YP+ AG
Sbjct: 153 P-ELFNAMASSRGSPIYPSVHSSATAG 178
Score = 41.6 bits (96), Expect = 0.008
Identities = 15/29 (51%), Positives = 19/29 (64%)
Frame = -3
Query: 522 PLRPDQNVCSHYSRYGICKFGPACRYDHP 436
P RPDQ C +Y + G CKFG C++ HP
Sbjct: 286 PERPDQPECQYYMKTGDCKFGAVCKFHHP 314
Score = 38.9 bits (89), Expect = 0.055
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = -3
Query: 522 PLRPDQNVCSHYSRYGICKFGPACRYDHP 436
P R Q C +Y + G CKFGP C++ HP
Sbjct: 79 PERMGQPECQYYLKTGTCKFGPTCKFHHP 107
>gb|AAM61197.1| zinc finger protein 3 [Arabidopsis thaliana]
Length = 354
Score = 96.3 bits (238), Expect = 3e-19
Identities = 39/62 (62%), Positives = 48/62 (76%)
Frame = -3
Query: 618 TGACKFKSNCKFHHPRNRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDH 439
TG CKF + CKFHHPR+R P C+LS GLPLRP + +C YSRYGICKFGP+C++DH
Sbjct: 234 TGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDH 293
Query: 438 PI 433
P+
Sbjct: 294 PM 295
Score = 68.9 bits (167), Expect = 5e-11
Identities = 28/61 (45%), Positives = 39/61 (63%)
Frame = -3
Query: 618 TGACKFKSNCKFHHPRNRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDH 439
TG CKF CKFHHPRN+ ++ PLRP+++ CS++ R G CKFG C+++H
Sbjct: 78 TGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGGTCKFNH 137
Query: 438 P 436
P
Sbjct: 138 P 138
Score = 52.4 bits (124), Expect = 5e-06
Identities = 23/61 (37%), Positives = 33/61 (53%)
Frame = -3
Query: 618 TGACKFKSNCKFHHPRNRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDH 439
TG C+F S C+F+HP +R + + + P R Q C Y + G CKFG C++ H
Sbjct: 33 TGLCRFGSTCRFNHPHDRKLVIATARIKGE-YPERIGQPECEFYLKTGTCKFGVTCKFHH 91
Query: 438 P 436
P
Sbjct: 92 P 92
Score = 40.0 bits (92), Expect = 0.024
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 534 DKGLPLRPDQNVCSHYSRYGICKFGPACRYDHPID 430
D P R + C++Y R G+C+FG CR++HP D
Sbjct: 15 DGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHD 49
Score = 39.7 bits (91), Expect = 0.032
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -3
Query: 522 PLRPDQNVCSHYSRYGICKFGPACRYDHPID----PLPVMMPGLGLQSYP 385
P RP Q C Y + G CKFG C++ HP D P ++ +GL P
Sbjct: 220 PERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRP 269
>ref|NP_680170.1| zinc finger protein 3 (gb|AAD27875.1); protein id: At5g16540.1,
supported by cDNA: 113763. [Arabidopsis thaliana]
Length = 375
Score = 96.3 bits (238), Expect = 3e-19
Identities = 39/62 (62%), Positives = 48/62 (76%)
Frame = -3
Query: 618 TGACKFKSNCKFHHPRNRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDH 439
TG CKF + CKFHHPR+R P C+LS GLPLRP + +C YSRYGICKFGP+C++DH
Sbjct: 255 TGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDH 314
Query: 438 PI 433
P+
Sbjct: 315 PM 316
Score = 68.9 bits (167), Expect = 5e-11
Identities = 28/61 (45%), Positives = 39/61 (63%)
Frame = -3
Query: 618 TGACKFKSNCKFHHPRNRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDH 439
TG CKF CKFHHPRN+ ++ PLRP+++ CS++ R G CKFG C+++H
Sbjct: 99 TGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGGTCKFNH 158
Query: 438 P 436
P
Sbjct: 159 P 159
Score = 52.4 bits (124), Expect = 5e-06
Identities = 23/61 (37%), Positives = 33/61 (53%)
Frame = -3
Query: 618 TGACKFKSNCKFHHPRNRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDH 439
TG C+F S C+F+HP +R + + + P R Q C Y + G CKFG C++ H
Sbjct: 54 TGLCRFGSTCRFNHPHDRKLVIATARIKGE-YPERIGQPECEFYLKTGTCKFGVTCKFHH 112
Query: 438 P 436
P
Sbjct: 113 P 113
Score = 40.0 bits (92), Expect = 0.024
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -3
Query: 534 DKGLPLRPDQNVCSHYSRYGICKFGPACRYDHPID 430
D P R + C++Y R G+C+FG CR++HP D
Sbjct: 36 DGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHD 70
Score = 39.7 bits (91), Expect = 0.032
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -3
Query: 522 PLRPDQNVCSHYSRYGICKFGPACRYDHPID----PLPVMMPGLGLQSYP 385
P RP Q C Y + G CKFG C++ HP D P ++ +GL P
Sbjct: 241 PERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRP 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,347,623
Number of Sequences: 1393205
Number of extensions: 12185984
Number of successful extensions: 31009
Number of sequences better than 10.0: 144
Number of HSP's better than 10.0 without gapping: 29259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30763
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
