Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000598A_C01 KMC000598A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA12049.1| agCP9037 [Anopheles gambiae str. PEST] 45 5e-04
gb|AAH43328.1| Similar to hypothetical protein B830022K16 [Mus m... 43 0.002
ref|NP_766514.1| RIKEN cDNA C330035N22; hypothetical protein B83... 43 0.002
gb|AAH29868.1| Similar to MSTP043 protein [Homo sapiens] 43 0.003
sp|Q9Y5W7|SNXE_HUMAN Sorting nexin 14 gi|13477273|gb|AAH05110.1|... 43 0.003
>gb|EAA12049.1| agCP9037 [Anopheles gambiae str. PEST]
Length = 1146
Score = 45.4 bits (106), Expect = 5e-04
Identities = 23/55 (41%), Positives = 35/55 (62%)
Frame = -1
Query: 507 LMIENAPPAIVSLVGRKEYEQCARDLYFFLQSSVCLKQLAFDILELLLLAAFPEL 343
L+ +N P + SL+G + Q A L+ LQ+S+ KQL +D+LE L+L FPE+
Sbjct: 1033 LLQDNIPELLCSLIGAQNARQGALKLFEVLQNSLYNKQLFYDLLETLMLELFPEI 1087
>gb|AAH43328.1| Similar to hypothetical protein B830022K16 [Mus musculus]
Length = 462
Score = 43.1 bits (100), Expect = 0.002
Identities = 24/73 (32%), Positives = 40/73 (53%)
Frame = -1
Query: 543 QEXDRRAKFVYELMIENAPPAIVSLVGRKEYEQCARDLYFFLQSSVCLKQLAFDILELLL 364
Q+ + AK +E M+ P IV +G + + R L+ LQ V KQL + +L++++
Sbjct: 382 QDKQKGAKQTFEEMMNYIPDLIVKCIGEETKYESIRLLFDGLQQPVLNKQLTYVLLDIVI 441
Query: 363 LAAFPELDDVFKQ 325
FPEL+ V K+
Sbjct: 442 QELFPELNKVQKE 454
>ref|NP_766514.1| RIKEN cDNA C330035N22; hypothetical protein B830022K16 [Mus musculus]
gi|26340106|dbj|BAC33716.1| unnamed protein product [Mus
musculus]
Length = 937
Score = 43.1 bits (100), Expect = 0.002
Identities = 24/73 (32%), Positives = 40/73 (53%)
Frame = -1
Query: 543 QEXDRRAKFVYELMIENAPPAIVSLVGRKEYEQCARDLYFFLQSSVCLKQLAFDILELLL 364
Q+ + AK +E M+ P IV +G + + R L+ LQ V KQL + +L++++
Sbjct: 857 QDKQKGAKQTFEEMMNYIPDLIVKCIGEETKYESIRLLFDGLQQPVLNKQLTYVLLDIVI 916
Query: 363 LAAFPELDDVFKQ 325
FPEL+ V K+
Sbjct: 917 QELFPELNKVQKE 929
>gb|AAH29868.1| Similar to MSTP043 protein [Homo sapiens]
Length = 483
Score = 42.7 bits (99), Expect = 0.003
Identities = 28/89 (31%), Positives = 49/89 (54%)
Frame = -1
Query: 558 SDEQKQEXDRRAKFVYELMIENAPPAIVSLVGRKEYEQCARDLYFFLQSSVCLKQLAFDI 379
S EQ QE +RA+ + ++EN P + SLVG++ ++ LQ + K L + +
Sbjct: 403 SKEQSQETKQRAQ---QKLLENIPDMLQSLVGQQNARHGIIKIFNALQETRANKHLLYAL 459
Query: 378 LELLLLAAFPELDDVFKQLHEEKHKFGEL 292
+ELLL+ PEL ++H ++ K G++
Sbjct: 460 MELLLIELCPEL-----RVHLDQLKAGQV 483
>sp|Q9Y5W7|SNXE_HUMAN Sorting nexin 14 gi|13477273|gb|AAH05110.1|AAH05110 Unknown (protein
for MGC:13217) [Homo sapiens] gi|15529064|gb|AAK97796.1|
sorting nexin 14 [Homo sapiens]
Length = 886
Score = 42.7 bits (99), Expect = 0.003
Identities = 23/74 (31%), Positives = 41/74 (55%)
Frame = -1
Query: 543 QEXDRRAKFVYELMIENAPPAIVSLVGRKEYEQCARDLYFFLQSSVCLKQLAFDILELLL 364
Q+ + AK +E M+ P +V +G + + R L+ LQ V KQL + +L++++
Sbjct: 806 QDKQKGAKQTFEEMMNYIPDLLVKCIGEETKYESIRLLFDGLQQPVLNKQLTYVLLDIVI 865
Query: 363 LAAFPELDDVFKQL 322
FPEL+ V K++
Sbjct: 866 QELFPELNKVQKEV 879
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,723,241
Number of Sequences: 1393205
Number of extensions: 9176532
Number of successful extensions: 54051
Number of sequences better than 10.0: 164
Number of HSP's better than 10.0 without gapping: 40213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46056
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
