Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000596A_C02 KMC000596A_c02
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00068232.1| hypothetical protein [Microbulbifer degradans... 33 2.0
gb|EAA22202.1| hypothetical protein [Plasmodium yoelii yoelii] 32 5.7
>ref|ZP_00068232.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 700
Score = 33.5 bits (75), Expect = 2.0
Identities = 20/65 (30%), Positives = 31/65 (46%)
Frame = +2
Query: 332 KGTYLGSKHCPLCMALAQKTDAFECLESSQVINSWTSKNPSCSQQTQPFSNSRSGYSEK* 511
+GTY G+ P+C+ Q + + SS +S +S + S S + S+S S S
Sbjct: 133 QGTYTGNFSLPVCVGQGQSSSSSSSTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 192
Query: 512 LSSPT 526
SS T
Sbjct: 193 SSSST 197
>gb|EAA22202.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 246
Score = 32.0 bits (71), Expect = 5.7
Identities = 22/67 (32%), Positives = 37/67 (54%), Gaps = 5/67 (7%)
Frame = -2
Query: 302 WVLHIVGDVSSFHVLSLMVVLVLQSILFVFLSVF*MCPFY-LENLLIGLLYLY----*VY 138
WV +I+G +F +L+ ++ L SI+FV L ++ L+ L++ L LY VY
Sbjct: 79 WVSYIIGIALTFRILTGLIFLTFSSIIFVSLLASITDKYFPLDILVLASLALYIFCCSVY 138
Query: 137 KIIHVSL 117
II+V +
Sbjct: 139 GIINVGI 145
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,620,340
Number of Sequences: 1393205
Number of extensions: 10324781
Number of successful extensions: 22675
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22659
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
