Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000594A_C01 KMC000594A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD13216.1| latex-abundant protein [Hevea brasiliensis] 49 3e-05
ref|NP_178052.1| hypothetical protein common family; protein id:... 45 6e-04
ref|NP_178050.1| hypothetical protein common family; protein id:... 44 0.001
ref|NP_178051.1| hypothetical protein common family; protein id:... 44 0.001
gb|AAM63441.1| latex-abundant protein-like [Arabidopsis thaliana] 43 0.002
>gb|AAD13216.1| latex-abundant protein [Hevea brasiliensis]
Length = 417
Score = 49.3 bits (116), Expect = 3e-05
Identities = 29/88 (32%), Positives = 47/88 (52%), Gaps = 1/88 (1%)
Frame = +2
Query: 206 SKKAILMGVVYPNEKEDDRILSHAWTEVRVLKEFLATYYKFKEGNIQILCDMGGHRV-PN 382
+KKA+L+G+ YP K + L +V+ + L Y F E +I +L D+ + P
Sbjct: 2 AKKAVLIGINYPGTKAE---LKGCINDVKRMYRCLVDRYGFSEEDITVLIDIDESYIQPT 58
Query: 383 QRNIKMDVRKLVMEAIPRDLLYIHIAAH 466
+NI+ + LV A P DLL++H + H
Sbjct: 59 GKNIRRVLTDLVRSAEPGDLLFVHYSGH 86
>ref|NP_178052.1| hypothetical protein common family; protein id: At1g79340.1,
supported by cDNA: gi_19347868 [Arabidopsis thaliana]
gi|7487912|pir||T01021 hypothetical protein YUP8H12R.4 -
Arabidopsis thaliana gi|3152600|gb|AAC17081.1| Contains
similarity to S. cerevisiae hypothetical protein
YOR197w, gb|Z75105. ESTs gb|H37409, gb|AA395290, and
gb|T43907 come from this gene. [Arabidopsis thaliana]
gi|19347869|gb|AAL85992.1| putative latex-abundant
protein [Arabidopsis thaliana]
gi|22136874|gb|AAM91781.1| putative latex-abundant
protein [Arabidopsis thaliana]
Length = 418
Score = 45.1 bits (105), Expect = 6e-04
Identities = 29/88 (32%), Positives = 44/88 (49%), Gaps = 1/88 (1%)
Frame = +2
Query: 206 SKKAILMGVVYPNEKEDDRILSHAWTEVRVLKEFLATYYKFKEGNIQILCDMG-GHRVPN 382
+KKA+L+G+ YP K + L +VR + + L Y F E NI +L D P
Sbjct: 2 TKKAVLIGINYPGTKAE---LRGCVNDVRRMYKCLVERYGFSEENITVLIDTDESSTQPT 58
Query: 383 QRNIKMDVRKLVMEAIPRDLLYIHIAAH 466
+NI+ + LV A D+L +H + H
Sbjct: 59 GKNIRRALADLVESADSGDVLVVHYSGH 86
>ref|NP_178050.1| hypothetical protein common family; protein id: At1g79320.1
[Arabidopsis thaliana] gi|7487918|pir||T01023
hypothetical protein YUP8H12R.6 - Arabidopsis thaliana
gi|3152597|gb|AAC17078.1| Contains similarity to S.
cerevisiae hypothetical protein YOR197w, gb|Z75105.
[Arabidopsis thaliana]
Length = 368
Score = 44.3 bits (103), Expect = 0.001
Identities = 28/88 (31%), Positives = 46/88 (51%), Gaps = 1/88 (1%)
Frame = +2
Query: 206 SKKAILMGVVYPNEKEDDRILSHAWTEVRVLKEFLATYYKFKEGNIQILCDMGGHRV-PN 382
+KKA+L+G+ Y K + L +VR ++ L Y F E NI++L D + P
Sbjct: 2 AKKALLIGINYVGTKAE---LRGCVNDVRRMRISLVERYGFSEENIKMLIDTDSSSIKPT 58
Query: 383 QRNIKMDVRKLVMEAIPRDLLYIHIAAH 466
+NI+ + LV A D+L++H + H
Sbjct: 59 GKNIRQALLDLVEPAKSGDVLFVHYSGH 86
>ref|NP_178051.1| hypothetical protein common family; protein id: At1g79330.1
[Arabidopsis thaliana] gi|7487917|pir||T01022
hypothetical protein YUP8H12R.5 - Arabidopsis thaliana
gi|3152557|gb|AAC17038.1| Contains similarity to S.
cerevisiae hypothetical protein YOR197w, gb|Z75105. EST
gb|T76227 comes from this gene. [Arabidopsis thaliana]
Length = 410
Score = 44.3 bits (103), Expect = 0.001
Identities = 29/88 (32%), Positives = 44/88 (49%), Gaps = 1/88 (1%)
Frame = +2
Query: 206 SKKAILMGVVYPNEKEDDRILSHAWTEVRVLKEFLATYYKFKEGNIQILCDMG-GHRVPN 382
+KKA+L+G+ YP K + L +VR + + L + F E NI L D P
Sbjct: 2 AKKAVLIGINYPGTKAE---LRGCVNDVRRVHKSLVDRFGFSERNITELIDTDESSTKPT 58
Query: 383 QRNIKMDVRKLVMEAIPRDLLYIHIAAH 466
+NI+ + LV A P D+L +H + H
Sbjct: 59 GKNIRRALLNLVESAKPGDVLVVHYSGH 86
>gb|AAM63441.1| latex-abundant protein-like [Arabidopsis thaliana]
Length = 320
Score = 43.1 bits (100), Expect = 0.002
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +2
Query: 215 AILMGVVYPNEKEDDRILSHAWTEVRVLKEFLATYYKFKEGNIQILCDMGGHRV-PNQRN 391
A+L+G YPN + + L +V +KE + + + FK+ +I++L D +V P N
Sbjct: 7 AVLVGCNYPNTRNE---LHGCINDVLAMKETILSRFGFKQDDIEVLTDEPESKVKPTGAN 63
Query: 392 IKMDVRKLV--MEAIPRDLLYIHIAAH 466
IK +R++V +A D+L+ H + H
Sbjct: 64 IKAALRRMVDKAQAGSGDILFFHYSGH 90
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,734,340
Number of Sequences: 1393205
Number of extensions: 10294947
Number of successful extensions: 28227
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 27101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28208
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
