Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000592A_C01 KMC000592A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD68065.1| SI:bZ46J2.6 (novel protein similar to vertebrate... 32 5.6
ref|XP_232801.1| similar to karyopherin (importin) alpha 2; m-im... 31 7.4
ref|ZP_00129638.1| hypothetical protein [Desulfovibrio desulfuri... 31 7.4
ref|NP_700697.1| dynein heavy chain, putative [Plasmodium falcip... 31 9.6
>emb|CAD68065.1| SI:bZ46J2.6 (novel protein similar to vertebrate arrestin) [Danio
rerio]
Length = 366
Score = 31.6 bits (70), Expect = 5.6
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = +3
Query: 6 DMSFGIKFYYNKILLTIEKEFHLKVTIEKE*NYKGHNAPRLVK 134
+++ G K NK +T +K H++V++EKE Y G P VK
Sbjct: 175 ELAAGPKADINKQFITADKPIHMEVSMEKELYYHGDPIPIKVK 217
>ref|XP_232801.1| similar to karyopherin (importin) alpha 2; m-importin-alpha-P1 [Mus
musculus] [Rattus norvegicus]
Length = 485
Score = 31.2 bits (69), Expect = 7.4
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -1
Query: 348 CLGRVWDLNSTSQQMRTLLNYQNHI*FPMELHFRSIHHNCGKII 217
C+ ++ + N T Q+ T ++ +H+ P FR +HHN +++
Sbjct: 242 CIIKLQNENQTLQRRCTFYDFNHHVYNPQHSKFRPLHHNDPEVL 285
>ref|ZP_00129638.1| hypothetical protein [Desulfovibrio desulfuricans G20]
Length = 1118
Score = 31.2 bits (69), Expect = 7.4
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -3
Query: 409 GLGLSILALMATMVGTTVFLLPRQGLGFKQHIATNEDTAKLSKSHLISHGTALQVNTPQL 230
GLGLSI ++ TM+G ++L QG G ++ D S + A+ V L
Sbjct: 772 GLGLSICRMLTTMMGGRIWLESTQGQGTAVYVEMRLDLHDRSAAETQPEECAMPVQAAPL 831
Query: 229 R 227
R
Sbjct: 832 R 832
>ref|NP_700697.1| dynein heavy chain, putative [Plasmodium falciparum 3D7]
gi|23495089|gb|AAN35421.1|AE014832_43 dynein heavy chain,
putative [Plasmodium falciparum 3D7]
Length = 5687
Score = 30.8 bits (68), Expect = 9.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 328 FKQHIATNEDTAKLSKSHLISHGTALQVNTPQLRQNHKKN 209
FK I TN++ +KL ++H +++NT L N +KN
Sbjct: 3086 FKDKIITNDNESKLKHQKNMNHVDDIKMNTKNLINNEEKN 3125
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,041,223
Number of Sequences: 1393205
Number of extensions: 8048826
Number of successful extensions: 16365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16363
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
