Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000590A_C01 KMC000590A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P27990|PALY_MEDSA Phenylalanine ammonia-lyase gi|99990|pir||S... 177 7e-44
prf||2001451A Phe ammonia lyase 174 4e-43
sp|Q01861|PAL1_PEA Phenylalanine ammonia-lyase 1 gi|282927|pir||... 174 4e-43
sp|P45732|PALY_STYHU Phenylalanine ammonia-lyase gi|556424|gb|AA... 174 6e-43
sp|Q04593|PAL2_PEA Phenylalanine ammonia-lyase 2 gi|217984|dbj|B... 172 2e-42
>sp|P27990|PALY_MEDSA Phenylalanine ammonia-lyase gi|99990|pir||S17444 phenylalanine
ammonia-lyase (EC 4.3.1.5) 1 - alfalfa
gi|19650|emb|CAA41169.1| phenylalanine ammonia-lyase
[Medicago sativa]
Length = 725
Score = 177 bits (448), Expect = 7e-44
Identities = 83/96 (86%), Positives = 88/96 (91%)
Frame = -1
Query: 493 TFEDELKSLLPXEVESARAAYESGNPTIPNKINECRSYPLYKFVREELGTELLTGEKTRS 314
TFE+ELK+LLP EVESAR AYESGNPTIPNKIN CRSYPLYKFVREELGT LLTGE S
Sbjct: 630 TFEEELKTLLPKEVESARTAYESGNPTIPNKINGCRSYPLYKFVREELGTGLLTGENVIS 689
Query: 313 PGEECDQLFTAICQGKIIDPLLECLGEWNDAPLPIC 206
PGEECD+LF+A+CQGKIIDPLLECLGEWN APLPIC
Sbjct: 690 PGEECDKLFSAMCQGKIIDPLLECLGEWNGAPLPIC 725
>prf||2001451A Phe ammonia lyase
Length = 723
Score = 174 bits (442), Expect = 4e-43
Identities = 81/95 (85%), Positives = 88/95 (92%)
Frame = -1
Query: 493 TFEDELKSLLPXEVESARAAYESGNPTIPNKINECRSYPLYKFVREELGTELLTGEKTRS 314
TFEDELK+LLP EVES RAAYESGNPT+PNKIN CRSYPLY+FVR+ELGT LLTGEK S
Sbjct: 628 TFEDELKTLLPKEVESTRAAYESGNPTVPNKINGCRSYPLYRFVRQELGTGLLTGEKVIS 687
Query: 313 PGEECDQLFTAICQGKIIDPLLECLGEWNDAPLPI 209
PGEECD+LFTAICQGKIIDPLL+CLG+WN APLPI
Sbjct: 688 PGEECDKLFTAICQGKIIDPLLQCLGDWNGAPLPI 722
>sp|Q01861|PAL1_PEA Phenylalanine ammonia-lyase 1 gi|282927|pir||S25303 phenylalanine
ammonia-lyase (EC 4.3.1.5) - garden pea
gi|217980|dbj|BAA00885.1| phenylalanine ammonia-lyase
[Pisum sativum] gi|217982|dbj|BAA00886.1| phenylalanine
ammonia-lyase [Pisum sativum]
Length = 723
Score = 174 bits (442), Expect = 4e-43
Identities = 81/95 (85%), Positives = 88/95 (92%)
Frame = -1
Query: 493 TFEDELKSLLPXEVESARAAYESGNPTIPNKINECRSYPLYKFVREELGTELLTGEKTRS 314
TFEDELK+LLP EVES RAAYESGNPT+PNKIN CRSYPLY+FVR+ELGT LLTGEK S
Sbjct: 628 TFEDELKTLLPKEVESTRAAYESGNPTVPNKINGCRSYPLYRFVRQELGTGLLTGEKVIS 687
Query: 313 PGEECDQLFTAICQGKIIDPLLECLGEWNDAPLPI 209
PGEECD+LFTAICQGKIIDPLL+CLG+WN APLPI
Sbjct: 688 PGEECDKLFTAICQGKIIDPLLQCLGDWNGAPLPI 722
>sp|P45732|PALY_STYHU Phenylalanine ammonia-lyase gi|556424|gb|AAA99500.1| phenylalanine
ammonia lyase
Length = 715
Score = 174 bits (440), Expect = 6e-43
Identities = 79/96 (82%), Positives = 87/96 (90%)
Frame = -1
Query: 493 TFEDELKSLLPXEVESARAAYESGNPTIPNKINECRSYPLYKFVREELGTELLTGEKTRS 314
TFE+ELK+LLP EVE AR AYE+G IPNKI ECRSYPLYKFVREELGTE+LTGEK RS
Sbjct: 620 TFEEELKTLLPKEVEGARIAYENGQSAIPNKIKECRSYPLYKFVREELGTEMLTGEKVRS 679
Query: 313 PGEECDQLFTAICQGKIIDPLLECLGEWNDAPLPIC 206
PGEECD+LFTA+CQGKIIDPLLEC+GEWN APLP+C
Sbjct: 680 PGEECDKLFTAMCQGKIIDPLLECIGEWNGAPLPLC 715
>sp|Q04593|PAL2_PEA Phenylalanine ammonia-lyase 2 gi|217984|dbj|BAA00887.1|
phenylalanine ammonia-lyase [Pisum sativum]
Length = 724
Score = 172 bits (436), Expect = 2e-42
Identities = 82/95 (86%), Positives = 86/95 (90%)
Frame = -1
Query: 493 TFEDELKSLLPXEVESARAAYESGNPTIPNKINECRSYPLYKFVREELGTELLTGEKTRS 314
TFEDELK+LLP EVESAR AYE+GN TI NKI ECRSYPLYKFVREELGT LLTGEK S
Sbjct: 629 TFEDELKTLLPKEVESARGAYENGNTTISNKIKECRSYPLYKFVREELGTSLLTGEKVIS 688
Query: 313 PGEECDQLFTAICQGKIIDPLLECLGEWNDAPLPI 209
PGEECD+LFTAICQGKIIDPLLECLG+WN APLPI
Sbjct: 689 PGEECDKLFTAICQGKIIDPLLECLGDWNGAPLPI 723
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,911,998
Number of Sequences: 1393205
Number of extensions: 8938020
Number of successful extensions: 18710
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 18239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18707
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
