Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000589A_C01 KMC000589A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA90342.1| unnamed protein product [Oryza sativa (japonica ... 173 1e-42
gb|AAM63002.1| unknown [Arabidopsis thaliana] 162 3e-39
ref|NP_197326.1| putative protein; protein id: At5g18250.1, supp... 162 3e-39
ref|NP_187054.1| hypothetical protein; protein id: At3g04040.1 [... 117 8e-26
gb|AAL68853.1|AF466199_12 gb protein [Sorghum bicolor] 80 2e-14
>dbj|BAA90342.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|7242916|dbj|BAA92514.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 138
Score = 173 bits (439), Expect = 1e-42
Identities = 82/114 (71%), Positives = 95/114 (82%), Gaps = 3/114 (2%)
Frame = -1
Query: 563 SKEMETSDWTIAPLVRDSFSMIGSAFGGTTSAFYGFNHVMPVVRRYVKGPMWLHFLIGTP 384
SK+METS WT+ PLVRDSFSMIGSA GGT AFYGFNH MP VRRY+KGPMW+HFL+G P
Sbjct: 25 SKDMETSSWTVPPLVRDSFSMIGSAIGGTAGAFYGFNHTMPFVRRYIKGPMWMHFLVGAP 84
Query: 383 PVIVFSSACAGLAGGAVPALAQLVSSSYHATLSSP---PSKDDKIQKSRTSSTL 231
PVIVFSSACAGLAGG +PALAQLVSSSYH+ +S + D++ K+R+SSTL
Sbjct: 85 PVIVFSSACAGLAGGTIPALAQLVSSSYHSATASSFAHTTSRDEMHKARSSSTL 138
>gb|AAM63002.1| unknown [Arabidopsis thaliana]
Length = 133
Score = 162 bits (409), Expect = 3e-39
Identities = 78/112 (69%), Positives = 91/112 (80%), Gaps = 4/112 (3%)
Frame = -1
Query: 563 SKEMETSDWTIAPLVRDSFSMIGSAFGGTTSAFYGFNHVMPVVRRYVKGPMWLHFLIGTP 384
++ +ETS WT+ P +RDSFSMIGSA GGT SAF GFNH MP+VR+++KGPMWLHFL+G P
Sbjct: 20 TRNLETSKWTVDPFIRDSFSMIGSAVGGTASAFIGFNHAMPIVRKWIKGPMWLHFLVGAP 79
Query: 383 PVIVFSSACAGLAGGAVPALAQLVSSSYHATL--SSPP--SKDDKIQKSRTS 240
PVIV SSACAGLAGG VPALAQL SSSY A + S PP KD+K+QKS TS
Sbjct: 80 PVIVLSSACAGLAGGTVPALAQLASSSYRAAVHSSQPPQAQKDNKMQKSTTS 131
>ref|NP_197326.1| putative protein; protein id: At5g18250.1, supported by cDNA: 1816.
[Arabidopsis thaliana] gi|9758907|dbj|BAB09483.1|
dbj|BAA90342.1~gene_id:MRG7.21~similar to unknown
protein [Arabidopsis thaliana]
Length = 133
Score = 162 bits (409), Expect = 3e-39
Identities = 78/112 (69%), Positives = 91/112 (80%), Gaps = 4/112 (3%)
Frame = -1
Query: 563 SKEMETSDWTIAPLVRDSFSMIGSAFGGTTSAFYGFNHVMPVVRRYVKGPMWLHFLIGTP 384
++ +ETS WT+ P +RDSFSMIGSA GGT SAF GFNH MP+VR+++KGPMWLHFL+G P
Sbjct: 20 TRNLETSKWTVDPFIRDSFSMIGSAVGGTASAFIGFNHAMPIVRKWIKGPMWLHFLVGAP 79
Query: 383 PVIVFSSACAGLAGGAVPALAQLVSSSYHATL--SSPP--SKDDKIQKSRTS 240
PVIV SSACAGLAGG VPALAQL SSSY A + S PP KD+K+QKS TS
Sbjct: 80 PVIVLSSACAGLAGGTVPALAQLASSSYRAAVHSSQPPQAQKDNKMQKSTTS 131
>ref|NP_187054.1| hypothetical protein; protein id: At3g04040.1 [Arabidopsis
thaliana] gi|6223648|gb|AAF05862.1|AC011698_13
hypothetical protein [Arabidopsis thaliana]
Length = 128
Score = 117 bits (294), Expect = 8e-26
Identities = 63/111 (56%), Positives = 76/111 (67%), Gaps = 2/111 (1%)
Frame = -1
Query: 563 SKEMETSDWTIAPLVRDSFSMIGSAFGGTTSAFYGFNHVMPVVRRYVKGPMWLHFLIGTP 384
+K +ET++WT+AP +RDSFSMIGSA GGT SAF GF+H + + F + P
Sbjct: 20 TKNLETNEWTVAPFIRDSFSMIGSAVGGTASAFIGFHHGISFNLSLID------FFVLAP 73
Query: 383 PVIVFSSACAGLAGGAVPALAQLVSSSYHATL--SSPPSKDDKIQKSRTSS 237
PVIV SSACAGLAGGAVPALAQL SSSYHA + S PP DK Q +S+
Sbjct: 74 PVIVVSSACAGLAGGAVPALAQLASSSYHAAVHSSQPPQGQDKNQLHNSST 124
>gb|AAL68853.1|AF466199_12 gb protein [Sorghum bicolor]
Length = 1009
Score = 80.1 bits (196), Expect = 2e-14
Identities = 36/83 (43%), Positives = 53/83 (63%)
Frame = -1
Query: 542 DWTIAPLVRDSFSMIGSAFGGTTSAFYGFNHVMPVVRRYVKGPMWLHFLIGTPPVIVFSS 363
DW I ++ D+ ++ GS G SA +GFN +P V+++VKGP WL L+G PP+++FS
Sbjct: 898 DWAITSVLHDATAVAGSGAGALLSAVHGFNTGIPFVQKHVKGPKWLQLLVGVPPLLMFSG 957
Query: 362 ACAGLAGGAVPALAQLVSSSYHA 294
A A A+P AQL +SY+A
Sbjct: 958 ASAVFGAYALPRFAQLTVTSYYA 980
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,982,839
Number of Sequences: 1393205
Number of extensions: 10295204
Number of successful extensions: 27553
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 26779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27529
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
