Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000587A_C01 KMC000587A_c01
(788 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187323.2| hypothetical protein; protein id: At3g06670.1, ... 47 4e-04
gb|AAF63831.1| unknown protein [Arabidopsis thaliana] gi|1232190... 47 4e-04
ref|NP_248195.1| modification methylase, type II R/M system [Met... 34 2.1
gb|ZP_00111803.1| hypothetical protein [Nostoc punctiforme] 33 4.7
>ref|NP_187323.2| hypothetical protein; protein id: At3g06670.1, supported by cDNA:
gi_20453089 [Arabidopsis thaliana]
gi|20453090|gb|AAM19788.1| At3g06670/T8E24.10
[Arabidopsis thaliana] gi|27764910|gb|AAO23576.1|
At3g06670/T8E24.10 [Arabidopsis thaliana]
Length = 865
Score = 46.6 bits (109), Expect = 4e-04
Identities = 20/28 (71%), Positives = 25/28 (88%)
Frame = -3
Query: 750 TTDNGQLGGEEHTLVSPKSSPEMAINGS 667
T+DNG+L GEE +V+PKSSPEMA+NGS
Sbjct: 838 TSDNGKLNGEESLVVAPKSSPEMAVNGS 865
>gb|AAF63831.1| unknown protein [Arabidopsis thaliana]
gi|12321909|gb|AAG50988.1|AC036106_1 hypothetical
protein; 8379-15114 [Arabidopsis thaliana]
Length = 863
Score = 46.6 bits (109), Expect = 4e-04
Identities = 20/28 (71%), Positives = 25/28 (88%)
Frame = -3
Query: 750 TTDNGQLGGEEHTLVSPKSSPEMAINGS 667
T+DNG+L GEE +V+PKSSPEMA+NGS
Sbjct: 836 TSDNGKLNGEESLVVAPKSSPEMAVNGS 863
>ref|NP_248195.1| modification methylase, type II R/M system [Methanococcus
jannaschii] gi|2500154|sp|Q58600|MT52_METJA Probable
modification methylase MJ1200 (Cytosine-specific
methyltransferase MJ1200) (M.MjaVIIP)
gi|2129124|pir||G64449 modification methylase (EC
2.1.1.-) homolog - Methanococcus jannaschii
gi|1591829|gb|AAB99203.1| modification methylase, type
II R/M system [Methanococcus jannaschii]
Length = 366
Score = 34.3 bits (77), Expect = 2.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 415 PPHEFLPLPAHFQKICPSIGWGVGLVFF 332
P HEF LPA F+K +GWG ++F
Sbjct: 253 PNHEFAALPARFRKRVHKLGWGDAFIYF 280
>gb|ZP_00111803.1| hypothetical protein [Nostoc punctiforme]
Length = 415
Score = 33.1 bits (74), Expect = 4.7
Identities = 21/55 (38%), Positives = 27/55 (48%)
Frame = -1
Query: 404 IFTSSSSFSKNLPEYRMGGWSCIFFNLLTLH*LY*LLGRGRQYVPYTGYTLLFPL 240
I TS S K +R+GGW + ++T LL G V YTG+T LF L
Sbjct: 203 ISTSLVSKDKRSQLFRLGGWVTLTIGIIT------LLRTGDTMVDYTGHTALFCL 251
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 688,021,694
Number of Sequences: 1393205
Number of extensions: 15642564
Number of successful extensions: 36914
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36903
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39495713322
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
