Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000586A_C04 KMC000586A_c04
(871 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_501590.1| Amiloride-sensitive sodium channel family membe... 35 1.9
ref|NP_713198.1| conserved hypothetical protein [Leptospira inte... 33 7.3
pir||T07035 histone H1, stress-inducible - tomato gi|825521|emb|... 33 7.3
pir||S19915 histone H1-like protein - tomato (fragment) 33 7.3
ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]... 32 9.5
>ref|NP_501590.1| Amiloride-sensitive sodium channel family member [Caenorhabditis
elegans] gi|7499730|pir||T21296 hypothetical protein
F23B2.3 - Caenorhabditis elegans
gi|3876275|emb|CAB05178.1| Hypothetical protein F23B2.3
[Caenorhabditis elegans]
Length = 643
Score = 34.7 bits (78), Expect = 1.9
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = -2
Query: 192 DASLFDLASQVRGGGGFFLSISLAPLILLFLFFFTCIFLYWVEVPLVLLFNIYSPLPYPK 13
DAS+ DL S + G G FL S+ ++ LFLFF ++W+ +YS K
Sbjct: 510 DASITDLLSAIGGNMGMFLGGSVITIVELFLFFSK---VFWIGFSKTRRNYLYSKRANEK 566
Query: 12 QKKK 1
KK
Sbjct: 567 AHKK 570
>ref|NP_713198.1| conserved hypothetical protein [Leptospira interrogans serovar lai
str. 56601] gi|24196890|gb|AAN50216.1|AE011464_13
conserved hypothetical protein [Leptospira interrogans
serovar lai str. 56601]
Length = 455
Score = 32.7 bits (73), Expect = 7.3
Identities = 14/27 (51%), Positives = 18/27 (65%)
Frame = -2
Query: 153 GGGFFLSISLAPLILLFLFFFTCIFLY 73
GGGFFL + L +ILL + FF IF +
Sbjct: 236 GGGFFLILMLESIILLVIIFFPLIFFF 262
>pir||T07035 histone H1, stress-inducible - tomato gi|825521|emb|CAA77867.1| H1
histone-like protein [Lycopersicon esculentum]
Length = 207
Score = 32.7 bits (73), Expect = 7.3
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 47 RSTRGTSTQYKKIQVKKKRNSSIKGAKLMLKKNPPPPRTWEARSKREASLKS 202
RSTR TST KK +V KK ++ K K+ K+ ++ A++K+ S+KS
Sbjct: 148 RSTRATSTAAKKTEVPKKAKATPKPKKVGAKRT---RKSTPAKAKQPKSIKS 196
>pir||S19915 histone H1-like protein - tomato (fragment)
Length = 103
Score = 32.7 bits (73), Expect = 7.3
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 47 RSTRGTSTQYKKIQVKKKRNSSIKGAKLMLKKNPPPPRTWEARSKREASLKS 202
RSTR TST KK +V KK ++ K K+ K+ ++ A++K+ S+KS
Sbjct: 44 RSTRATSTAAKKTEVPKKAKATPKPKKVGAKRT---RKSTPAKAKQPKSIKS 92
>ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]
gi|7007468|dbj|BAA90870.1| 235K polyprotein [Apple
latent spherical virus]
Length = 2079
Score = 32.3 bits (72), Expect = 9.5
Identities = 14/43 (32%), Positives = 22/43 (50%)
Frame = +3
Query: 363 VNLQKALSSWMQSSQFGFQTNPLQKSNPLQKPTLHPKITPPDA 491
V +++ SS++ +F F P S+P PT P TPP +
Sbjct: 140 VKTRRSFSSFLPKEEFSFVLGPCPTSSPEVTPTSTPSTTPPSS 182
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 806,904,147
Number of Sequences: 1393205
Number of extensions: 19363405
Number of successful extensions: 53096
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 49603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52901
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 46545945579
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
