Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000585A_C02 KMC000585A_c02
(618 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196024.1| expressed protein; protein id: At5g04040.1 [Ara... 42 1e-04
dbj|BAB61223.1| contains EST AU057376(S21389)~similar to Arabido... 46 3e-04
ref|NP_191273.1| expressed protein; protein id: At3g57140.1 [Ara... 42 0.008
>ref|NP_196024.1| expressed protein; protein id: At5g04040.1 [Arabidopsis thaliana]
gi|11282314|pir||T48431 hypothetical protein F8F6.250 -
Arabidopsis thaliana gi|7406414|emb|CAB85524.1| putative
protein [Arabidopsis thaliana]
gi|22531263|gb|AAM97135.1| putative protein [Arabidopsis
thaliana]
Length = 825
Score = 42.0 bits (97), Expect(2) = 1e-04
Identities = 21/46 (45%), Positives = 31/46 (66%), Gaps = 5/46 (10%)
Frame = -2
Query: 425 LQMERQPTQG-----EKLSAIKANCQIELSLDECVMILSHKREFHR 303
+++++ QG EKLSAIK+NC IEL+LD+ V IL+H R +
Sbjct: 533 VELQKAANQGRRCTWEKLSAIKSNCGIELALDDSVAILNHMRRLKK 578
Score = 25.4 bits (54), Expect(2) = 1e-04
Identities = 10/12 (83%), Positives = 12/12 (99%)
Frame = -3
Query: 319 RENSTGSLEDLI 284
RENSTGSL+DL+
Sbjct: 614 RENSTGSLDDLV 625
>dbj|BAB61223.1| contains EST AU057376(S21389)~similar to Arabidopsis thaliana
chromosome 5, F8F6.250~unknown protein [Oryza sativa
(japonica cultivar-group)] gi|20804680|dbj|BAB92368.1|
P0512C01.22 [Oryza sativa (japonica cultivar-group)]
Length = 1044
Score = 46.2 bits (108), Expect = 3e-04
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Frame = -2
Query: 422 QMERQPTQG-----EKLSAIKANCQIELSLDECVMILSHKREFHR 303
++++ QG EKLSAI+ANC IEL LDECV +L+H R R
Sbjct: 534 ELQKAANQGRRCTWEKLSAIRANCAIELVLDECVALLNHMRRLKR 578
>ref|NP_191273.1| expressed protein; protein id: At3g57140.1 [Arabidopsis thaliana]
gi|11282313|pir||T47774 hypothetical protein F24I3.220 -
Arabidopsis thaliana gi|6911884|emb|CAB72184.1| putative
protein [Arabidopsis thaliana]
gi|26450904|dbj|BAC42559.1| unknown protein [Arabidopsis
thaliana] gi|29029050|gb|AAO64904.1| At3g57140
[Arabidopsis thaliana]
Length = 801
Score = 41.6 bits (96), Expect = 0.008
Identities = 21/46 (45%), Positives = 30/46 (64%), Gaps = 5/46 (10%)
Frame = -2
Query: 425 LQMERQPTQG-----EKLSAIKANCQIELSLDECVMILSHKREFHR 303
+++++ QG EKL+ IKAN IEL+LDECV +L+H R R
Sbjct: 532 VEIQKAANQGRRCTWEKLAVIKANFGIELALDECVTVLNHMRRLKR 577
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,071,821
Number of Sequences: 1393205
Number of extensions: 10478503
Number of successful extensions: 24370
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24350
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
