Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000583A_C02 KMC000583A_c02
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00029074.1| hypothetical protein [Burkholderia fungorum] 33 1.7
gb|ZP_00023961.1| hypothetical protein [Ralstonia metallidurans] 32 5.0
ref|NP_504070.2| Nuclear receptor family member family member (4... 32 5.0
ref|NP_498540.1| Tissue specific transplantation antigen p35B li... 31 8.6
gb|AAL10198.1| MatK [Lepidozamia peroffskyana] 31 8.6
>ref|ZP_00029074.1| hypothetical protein [Burkholderia fungorum]
Length = 370
Score = 33.5 bits (75), Expect = 1.7
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 96 LTLVQFLVVIAKNDSGIYNRLLKAGHYTS*IPL--HVQWNQWLAI 224
+TL +++V AK SG+ LLK G YTS P H WN+ A+
Sbjct: 290 VTLADYVIVTAK--SGVSKSLLKPGMYTSAFPAVNHADWNKSAAL 332
>gb|ZP_00023961.1| hypothetical protein [Ralstonia metallidurans]
Length = 358
Score = 32.0 bits (71), Expect = 5.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 226 PTYFQLFPFPLGLKWLQVYSYSATFYVHKTPRGPSAIMAHHMG 354
P Q+ PFP G + + + AT YV GP+ ++ H G
Sbjct: 73 PLQAQVKPFPPGFRHQNIQTEGATLYVRVGGSGPAVVLLHGFG 115
>ref|NP_504070.2| Nuclear receptor family member family member (42.8 kD)
[Caenorhabditis elegans] gi|20901922|gb|AAC24282.2|
Hypothetical protein C17E7.8 [Caenorhabditis elegans]
Length = 376
Score = 32.0 bits (71), Expect = 5.0
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -3
Query: 357 NSHMMCHDCRGPSGCFVYIESGTIGVYL*PFKPKWERK*LKISRKLLTTGSIG 199
N++ + + C PS C + + + VYL P + +WE RKL GS+G
Sbjct: 135 NAYCVINICEDPSFCDLVAQGSKLSVYLRPQEIEWE----NTERKLKPWGSLG 183
>ref|NP_498540.1| Tissue specific transplantation antigen p35B like [Caenorhabditis
elegans] gi|7445368|pir||T16645 hypothetical protein
R01H2.5 - Caenorhabditis elegans
gi|458994|gb|AAA50647.1| Hypothetical protein R01H2.5
[Caenorhabditis elegans]
Length = 315
Score = 31.2 bits (69), Expect = 8.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 266 NGYKYTPIVPLSMYTKHPEGPLQSWHIIWELVRPSILVHR 385
+G KYT +VP +++ H LQS H++ L+ + + R
Sbjct: 155 HGRKYTSVVPCNVFGPHDNYNLQSGHVLPALIHKAYVAQR 194
>gb|AAL10198.1| MatK [Lepidozamia peroffskyana]
Length = 466
Score = 31.2 bits (69), Expect = 8.6
Identities = 14/38 (36%), Positives = 18/38 (46%)
Frame = +2
Query: 245 FLSHLGLNGYKYTPIVPLSMYTKHPEGPLQSWHIIWEL 358
F S L L G P VP S+ +KHP + W W +
Sbjct: 92 FYSELVLGGLTAIPGVPFSIRSKHPLEEMNEWASFWSI 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,225,230
Number of Sequences: 1393205
Number of extensions: 11016983
Number of successful extensions: 26770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26761
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
