Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000580A_C03 KMC000580A_c03
(895 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177163.1| hypothetical protein; protein id: At1g70060.1 [... 190 3e-47
pir||C96723 hypothetical protein F20P5.21 [imported] - Arabidops... 186 4e-46
ref|NP_176197.1| hypothetical protein; protein id: At1g59890.1 [... 183 3e-45
dbj|BAB78631.1| putative co-repressor protein [Oryza sativa (jap... 173 4e-42
pir||A96623 hypothetical protein F23H11.20 [imported] - Arabidop... 164 1e-39
>ref|NP_177163.1| hypothetical protein; protein id: At1g70060.1 [Arabidopsis thaliana]
Length = 1386
Score = 190 bits (482), Expect = 3e-47
Identities = 102/188 (54%), Positives = 133/188 (70%), Gaps = 4/188 (2%)
Frame = -1
Query: 895 EEMDNKLLQLYAYEKSRKLGKFIDIVYHENACVILHEENIYRXEYSPG-PKKLSIQLMDC 719
+EMDNKL QLYAYEKSRK KF+D VY+ENA V+L +E+IYR E P KLSIQL+D
Sbjct: 1200 DEMDNKLQQLYAYEKSRKPEKFLDAVYYENALVLLPDEDIYRIECEQSTPSKLSIQLLDY 1259
Query: 718 GHDKPEVTAVSVDPKFSTYLHNDFLSVVPDKKEKSRLFLKRNKHRYAGSSEFSSQAMEGL 539
GHDKP+VT++S+DP F+ YLHN FLS P+ KE R++LKRNK + G E + + +
Sbjct: 1260 GHDKPDVTSISMDPTFAAYLHNVFLSYQPNAKENPRIYLKRNKRKNGGDDELCT--TDEV 1317
Query: 538 RVFNGLECKIACSSSKVSYVLDTEDVLYRKKSQRRILHPTS---SCNEPAKSSNIRSSRA 368
++ NGLECKI CSSSKVSYVLDTEDVL+R K +R++L+ + + + S IR R
Sbjct: 1318 KIINGLECKITCSSSKVSYVLDTEDVLHRAK-RRKLLNQSGLPLAHDSVCSGSLIRQRRT 1376
Query: 367 LRFCKLFS 344
R+ KL +
Sbjct: 1377 QRYQKLLT 1384
>pir||C96723 hypothetical protein F20P5.21 [imported] - Arabidopsis thaliana
gi|2194132|gb|AAB61107.1| F20P5.21 gene product
[Arabidopsis thaliana]
Length = 1383
Score = 186 bits (472), Expect = 4e-46
Identities = 95/158 (60%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Frame = -1
Query: 895 EEMDNKLLQLYAYEKSRKLGKFIDIVYHENACVILHEENIYRXEYSPG-PKKLSIQLMDC 719
+EMDNKL QLYAYEKSRK KF+D VY+ENA V+L +E+IYR E P KLSIQL+D
Sbjct: 1200 DEMDNKLQQLYAYEKSRKPEKFLDAVYYENALVLLPDEDIYRIECEQSTPSKLSIQLLDY 1259
Query: 718 GHDKPEVTAVSVDPKFSTYLHNDFLSVVPDKKEKSRLFLKRNKHRYAGSSEFSSQAMEGL 539
GHDKP+VT++S+DP F+ YLHN FLS P+ KE R++LKRNK + G E + + +
Sbjct: 1260 GHDKPDVTSISMDPTFAAYLHNVFLSYQPNAKENPRIYLKRNKRKNGGDDELCT--TDEV 1317
Query: 538 RVFNGLECKIACSSSKVSYVLDTEDVLYRKKSQRRILH 425
++ NGLECKI CSSSKVSYVLDTEDVL+R K +R++L+
Sbjct: 1318 KIINGLECKITCSSSKVSYVLDTEDVLHRAK-RRKLLN 1354
>ref|NP_176197.1| hypothetical protein; protein id: At1g59890.1 [Arabidopsis thaliana]
Length = 1125
Score = 183 bits (464), Expect = 3e-45
Identities = 100/184 (54%), Positives = 125/184 (67%), Gaps = 5/184 (2%)
Frame = -1
Query: 895 EEMDNKLLQLYAYEKSRKLGKFIDIVYHENACVILHEENIYRXEYSPGPKKLSIQLMDCG 716
+E D KLLQLYAYE RK G+F DIVYHENA +LH++NIYR EYS +L IQLM+
Sbjct: 931 DETDTKLLQLYAYENYRKPGRFFDIVYHENARALLHDQNIYRIEYSSAQTRLGIQLMNSW 990
Query: 715 HDKPEVTAVSVDPKFSTYLHNDFLSVVPDKKEKSRLFLKRNKHRYAGSSEFS---SQAME 545
+D+PEVTAV+V+P F+ YL NDFLS V D +EK LFLKRNK + +G E S S+A+E
Sbjct: 991 NDQPEVTAVTVEPGFANYLQNDFLSFVSD-EEKPGLFLKRNKAKLSGPGEESLGMSRALE 1049
Query: 544 GLRVFNGLECKIACSSSKVSYVLDTEDVLYRKKSQRRILHPTSSCNEPAKSSN--IRSSR 371
GL + N +ECKIACSS KV Y T D+LYR+K ++ L+PT N S+ R R
Sbjct: 1050 GLNIINEVECKIACSSFKVKYEPHTADLLYRRKQKKATLNPTGPENVKTSDSSELSRKKR 1109
Query: 370 ALRF 359
RF
Sbjct: 1110 ISRF 1113
>dbj|BAB78631.1| putative co-repressor protein [Oryza sativa (japonica
cultivar-group)]
Length = 1589
Score = 173 bits (438), Expect = 4e-42
Identities = 84/138 (60%), Positives = 109/138 (78%), Gaps = 2/138 (1%)
Frame = -1
Query: 895 EEMDNKLLQLYAYEKSRKLGKFIDIVYHENACVILHEENIYRXEYSPGPKKLSIQLMDCG 716
+EMDNKLLQLY YEKSR G+F D+VYHENA V+LHEE+IYR E P KLSIQLM+ G
Sbjct: 1420 DEMDNKLLQLYLYEKSRSPGRFFDLVYHENARVLLHEESIYRFECCSNPTKLSIQLMEYG 1479
Query: 715 HDKPEVTAVSVDPKFSTYLHNDFLSVVPDKKEKSRLFLKRNKHRYAGSSEFSS--QAMEG 542
H+KPEVTAVS+DP FS+YL N++LS + D+K +FL+RNK +++ + E S +AM+G
Sbjct: 1480 HEKPEVTAVSIDPNFSSYLFNEYLSSMSDRKLSEGVFLERNKRKHSNNDEPSDSLKAMDG 1539
Query: 541 LRVFNGLECKIACSSSKV 488
++V NGLECKI+C +SKV
Sbjct: 1540 VKVANGLECKISCKTSKV 1557
>pir||A96623 hypothetical protein F23H11.20 [imported] - Arabidopsis thaliana
gi|5080821|gb|AAD39330.1|AC007258_19 Hypothetical protein
[Arabidopsis thaliana]
Length = 1108
Score = 164 bits (416), Expect = 1e-39
Identities = 93/184 (50%), Positives = 119/184 (64%), Gaps = 5/184 (2%)
Frame = -1
Query: 895 EEMDNKLLQLYAYEKSRKLGKFIDIVYHENACVILHEENIYRXEYSPGPKKLSIQLMDCG 716
+E D KLLQLYAYE RK G+F DIVYHENA +LH++NIYR EYS +L IQLM+
Sbjct: 926 DETDTKLLQLYAYENYRKPGRFFDIVYHENARALLHDQNIYRIEYSSAQTRLGIQLMNSW 985
Query: 715 HDKPEVTAVSVDPKFSTYLHNDFLSVVPDKKEKSRLFLKRNKHRYAGSSEFS---SQAME 545
+D+PEVTAV+V+P F+ YL NDFLS V D +EK LFLKRNK + +G E S S+A+E
Sbjct: 986 NDQPEVTAVTVEPGFANYLQNDFLSFVSD-EEKPGLFLKRNKAKLSGPGEESLGMSRALE 1044
Query: 544 GLRVFNGLECKIACSSSKVSYVLDTEDVLYRKKSQRRILHPTSSCNEPAKSSN--IRSSR 371
GL + N +ECKIAC ++LYR+K ++ L+PT N S+ R R
Sbjct: 1045 GLNIINEVECKIAC------------NLLYRRKQKKATLNPTGPENVKTSDSSELSRKKR 1092
Query: 370 ALRF 359
RF
Sbjct: 1093 ISRF 1096
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 702,076,645
Number of Sequences: 1393205
Number of extensions: 14242611
Number of successful extensions: 35057
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 33376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35003
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 48775691475
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
