Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000579A_C02 KMC000579A_c02
(711 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02798.1| gene_id:MDC11.12~pir||I52882~similar to unknown ... 224 1e-57
ref|NP_187937.1| unknown protein; protein id: At3g13290.1 [Arabi... 224 1e-57
dbj|BAB02799.1| gb|AAF53066.1~gene_id:MDC11.13~similar to unknow... 223 3e-57
gb|AAM91544.1| unknown protein [Arabidopsis thaliana] 223 3e-57
ref|NP_187938.1| hypothetical protein; protein id: At3g13300.1 [... 223 3e-57
>dbj|BAB02798.1| gene_id:MDC11.12~pir||I52882~similar to unknown protein [Arabidopsis
thaliana]
Length = 1340
Score = 224 bits (570), Expect = 1e-57
Identities = 113/162 (69%), Positives = 135/162 (82%), Gaps = 2/162 (1%)
Frame = -1
Query: 705 NPHPVQLNSGPL--LHEKVEVPLDPTKELARLISERKYDEAFTVSLQRSDVSIVSWLCSQ 532
NP QL++GPL L EKVE P+DPT EL+RLISERKY+E+FT +LQRSDVSIVSWLCSQ
Sbjct: 1182 NPLVTQLSNGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQ 1241
Query: 531 VDLHGLLSMVPLPLSQGVVLSLLQQLACDINNDTPRKLAWMTDIAAAINSSDPMITLHVR 352
VDL GLL+M PLPLSQGV+LSLLQQLACDI+ DT RKL WMTD+ AIN SD MI +H R
Sbjct: 1242 VDLRGLLAMNPLPLSQGVLLSLLQQLACDISTDTSRKLGWMTDVVTAINPSDQMIAVHAR 1301
Query: 351 GIFEQVYQILNHQRSLPTMTGPDLSSIRLLMHVVNSVLVTCK 226
IFEQVYQIL+H R+ P G D+S++RL+MHV+NS+L++CK
Sbjct: 1302 PIFEQVYQILHHHRNAP---GSDVSAVRLIMHVINSLLMSCK 1340
>ref|NP_187937.1| unknown protein; protein id: At3g13290.1 [Arabidopsis thaliana]
Length = 1322
Score = 224 bits (570), Expect = 1e-57
Identities = 113/162 (69%), Positives = 135/162 (82%), Gaps = 2/162 (1%)
Frame = -1
Query: 705 NPHPVQLNSGPL--LHEKVEVPLDPTKELARLISERKYDEAFTVSLQRSDVSIVSWLCSQ 532
NP QL++GPL L EKVE P+DPT EL+RLISERKY+E+FT +LQRSDVSIVSWLCSQ
Sbjct: 1164 NPLVTQLSNGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQ 1223
Query: 531 VDLHGLLSMVPLPLSQGVVLSLLQQLACDINNDTPRKLAWMTDIAAAINSSDPMITLHVR 352
VDL GLL+M PLPLSQGV+LSLLQQLACDI+ DT RKL WMTD+ AIN SD MI +H R
Sbjct: 1224 VDLRGLLAMNPLPLSQGVLLSLLQQLACDISTDTSRKLGWMTDVVTAINPSDQMIAVHAR 1283
Query: 351 GIFEQVYQILNHQRSLPTMTGPDLSSIRLLMHVVNSVLVTCK 226
IFEQVYQIL+H R+ P G D+S++RL+MHV+NS+L++CK
Sbjct: 1284 PIFEQVYQILHHHRNAP---GSDVSAVRLIMHVINSLLMSCK 1322
>dbj|BAB02799.1| gb|AAF53066.1~gene_id:MDC11.13~similar to unknown protein
[Arabidopsis thaliana]
Length = 1344
Score = 223 bits (567), Expect = 3e-57
Identities = 114/157 (72%), Positives = 133/157 (84%), Gaps = 2/157 (1%)
Frame = -1
Query: 690 QLNSGPL--LHEKVEVPLDPTKELARLISERKYDEAFTVSLQRSDVSIVSWLCSQVDLHG 517
QL+ GPL L EKVE P+DPT EL+RLISERKY+E+FT +LQRSDVSIVSWLCSQVDL G
Sbjct: 1191 QLSGGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRG 1250
Query: 516 LLSMVPLPLSQGVVLSLLQQLACDINNDTPRKLAWMTDIAAAINSSDPMITLHVRGIFEQ 337
LL+M PLPLSQGV+LSLLQQLACDI+ DT RKLAWMTD+ AAIN SD MI +H R IFEQ
Sbjct: 1251 LLAMNPLPLSQGVLLSLLQQLACDISKDTSRKLAWMTDVVAAINPSDQMIAVHARPIFEQ 1310
Query: 336 VYQILNHQRSLPTMTGPDLSSIRLLMHVVNSVLVTCK 226
VYQIL+H R+ P G D+S+IRL+MHV+NS+L+ CK
Sbjct: 1311 VYQILHHHRNAP---GSDVSAIRLIMHVINSMLMGCK 1344
>gb|AAM91544.1| unknown protein [Arabidopsis thaliana]
Length = 1344
Score = 223 bits (567), Expect = 3e-57
Identities = 114/157 (72%), Positives = 133/157 (84%), Gaps = 2/157 (1%)
Frame = -1
Query: 690 QLNSGPL--LHEKVEVPLDPTKELARLISERKYDEAFTVSLQRSDVSIVSWLCSQVDLHG 517
QL+ GPL L EKVE P+DPT EL+RLISERKY+E+FT +LQRSDVSIVSWLCSQVDL G
Sbjct: 1191 QLSGGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRG 1250
Query: 516 LLSMVPLPLSQGVVLSLLQQLACDINNDTPRKLAWMTDIAAAINSSDPMITLHVRGIFEQ 337
LL+M PLPLSQGV+LSLLQQLACDI+ DT RKLAWMTD+ AAIN SD MI +H R IFEQ
Sbjct: 1251 LLAMNPLPLSQGVLLSLLQQLACDISKDTSRKLAWMTDVVAAINPSDQMIAVHARPIFEQ 1310
Query: 336 VYQILNHQRSLPTMTGPDLSSIRLLMHVVNSVLVTCK 226
VYQIL+H R+ P G D+S+IRL+MHV+NS+L+ CK
Sbjct: 1311 VYQILHHHRNAP---GSDVSAIRLIMHVINSMLMGCK 1344
>ref|NP_187938.1| hypothetical protein; protein id: At3g13300.1 [Arabidopsis thaliana]
Length = 1326
Score = 223 bits (567), Expect = 3e-57
Identities = 114/157 (72%), Positives = 133/157 (84%), Gaps = 2/157 (1%)
Frame = -1
Query: 690 QLNSGPL--LHEKVEVPLDPTKELARLISERKYDEAFTVSLQRSDVSIVSWLCSQVDLHG 517
QL+ GPL L EKVE P+DPT EL+RLISERKY+E+FT +LQRSDVSIVSWLCSQVDL G
Sbjct: 1173 QLSGGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRG 1232
Query: 516 LLSMVPLPLSQGVVLSLLQQLACDINNDTPRKLAWMTDIAAAINSSDPMITLHVRGIFEQ 337
LL+M PLPLSQGV+LSLLQQLACDI+ DT RKLAWMTD+ AAIN SD MI +H R IFEQ
Sbjct: 1233 LLAMNPLPLSQGVLLSLLQQLACDISKDTSRKLAWMTDVVAAINPSDQMIAVHARPIFEQ 1292
Query: 336 VYQILNHQRSLPTMTGPDLSSIRLLMHVVNSVLVTCK 226
VYQIL+H R+ P G D+S+IRL+MHV+NS+L+ CK
Sbjct: 1293 VYQILHHHRNAP---GSDVSAIRLIMHVINSMLMGCK 1326
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,511,719
Number of Sequences: 1393205
Number of extensions: 12041874
Number of successful extensions: 28904
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 27870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28892
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
