Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000578A_C01 KMC000578A_c01
(740 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q41062|SECA_PEA Preprotein translocase secA subunit, chloropl... 191 9e-48
pir||S65668 preprotein translocase secA precursor - garden pea 191 9e-48
ref|NP_192089.1| putative SecA-type chloroplast protein transpor... 152 4e-36
sp|Q9SYI0|SECA_ARATH Preprotein translocase secA subunit, chloro... 152 4e-36
sp|Q36795|SECA_SPIOL Preprotein translocase secA subunit, chloro... 150 1e-35
>sp|Q41062|SECA_PEA Preprotein translocase secA subunit, chloroplast precursor
gi|1122325|emb|CAA57798.1| chloroplast SecA protein
[Pisum sativum]
Length = 1011
Score = 191 bits (485), Expect = 9e-48
Identities = 93/105 (88%), Positives = 99/105 (93%)
Frame = -1
Query: 740 FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY 561
FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY
Sbjct: 903 FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY 962
Query: 560 SIYQFKPVMVKQDQDKTENPKSGKRNARNQANTNSEPIGTVEPSS 426
SIYQFKPV++KQDQDK EN KSGKRNAR +TN +P+GTVEPS+
Sbjct: 963 SIYQFKPVLLKQDQDKMENQKSGKRNARPPTDTNPDPVGTVEPST 1007
>pir||S65668 preprotein translocase secA precursor - garden pea
Length = 1011
Score = 191 bits (485), Expect = 9e-48
Identities = 93/105 (88%), Positives = 99/105 (93%)
Frame = -1
Query: 740 FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY 561
FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY
Sbjct: 903 FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY 962
Query: 560 SIYQFKPVMVKQDQDKTENPKSGKRNARNQANTNSEPIGTVEPSS 426
SIYQFKPV++KQDQDK EN KSGKRNAR +TN +P+GTVEPS+
Sbjct: 963 SIYQFKPVLLKQDQDKMENQKSGKRNARPPTDTNPDPVGTVEPST 1007
>ref|NP_192089.1| putative SecA-type chloroplast protein transport factor; protein id:
At4g01800.1 [Arabidopsis thaliana]
Length = 1022
Score = 152 bits (385), Expect = 4e-36
Identities = 82/108 (75%), Positives = 93/108 (85%), Gaps = 2/108 (1%)
Frame = -1
Query: 740 FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY 561
FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY
Sbjct: 914 FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY 973
Query: 560 SIYQFKPVMVKQDQD-KTENPKSGKRNARNQANTNSEPIG-TVEPSSI 423
SIYQF+PV VK+D++ K++N K K+ + A+ + +G T EPSSI
Sbjct: 974 SIYQFQPVRVKKDEEKKSQNGKPSKQ--VDNASEKPKQVGVTDEPSSI 1019
>sp|Q9SYI0|SECA_ARATH Preprotein translocase secA subunit, chloroplast precursor
gi|25298335|pir||B85023 hypothetical protein AT4g01800
[imported] - Arabidopsis thaliana
gi|4558549|gb|AAD22642.1|AC007138_6 putative SecA-type
chloroplast protein transport factor [Arabidopsis
thaliana] gi|7268223|emb|CAB77750.1| putative SecA-type
chloroplast protein transport factor [Arabidopsis
thaliana]
Length = 1021
Score = 152 bits (385), Expect = 4e-36
Identities = 82/108 (75%), Positives = 93/108 (85%), Gaps = 2/108 (1%)
Frame = -1
Query: 740 FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY 561
FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY
Sbjct: 913 FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY 972
Query: 560 SIYQFKPVMVKQDQD-KTENPKSGKRNARNQANTNSEPIG-TVEPSSI 423
SIYQF+PV VK+D++ K++N K K+ + A+ + +G T EPSSI
Sbjct: 973 SIYQFQPVRVKKDEEKKSQNGKPSKQ--VDNASEKPKQVGVTDEPSSI 1018
>sp|Q36795|SECA_SPIOL Preprotein translocase secA subunit, chloroplast precursor
gi|939976|emb|CAA88933.1| SecA [Spinacia oleracea]
Length = 1036
Score = 150 bits (380), Expect = 1e-35
Identities = 79/112 (70%), Positives = 88/112 (78%), Gaps = 2/112 (1%)
Frame = -1
Query: 740 FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY 561
FLILSNIDRLWKEHLQA+KFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY
Sbjct: 924 FLILSNIDRLWKEHLQAIKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIY 983
Query: 560 SIYQFKPVMVK-QDQDKTENPKSGKRNARNQANTNSEPIGTVE-PSSI*PES 411
S YQFKPV+VK Q+Q + P S + + N P+ E PSS P++
Sbjct: 984 SAYQFKPVVVKNQEQQQKGKPDSSNVENKRIGDANLNPVSVTESPSSDSPQN 1035
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 600,513,709
Number of Sequences: 1393205
Number of extensions: 12324511
Number of successful extensions: 28810
Number of sequences better than 10.0: 185
Number of HSP's better than 10.0 without gapping: 27867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28793
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
