Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000575A_C01 KMC000575A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194749.1| putative protein; protein id: At4g30200.1, supp... 138 7e-32
gb|AAO00859.1| putative protein [Arabidopsis thaliana] 138 7e-32
ref|NP_200548.1| putative protein; protein id: At5g57380.1 [Arab... 133 2e-30
ref|NP_179478.1| hypothetical protein; protein id: At2g18880.1 [... 90 2e-17
ref|NP_189087.1| hypothetical protein; protein id: At3g24440.1 [... 89 3e-17
>ref|NP_194749.1| putative protein; protein id: At4g30200.1, supported by cDNA:
gi_11177136 [Arabidopsis thaliana]
gi|7486763|pir||T14080 hypothetical protein F9N11.50 -
Arabidopsis thaliana gi|5730130|emb|CAB52464.1| putative
protein [Arabidopsis thaliana]
gi|7269920|emb|CAB81013.1| putative protein [Arabidopsis
thaliana] gi|11177137|dbj|BAB17836.1| nuclear
coiled-coil protein AT4g30200 [Arabidopsis thaliana]
Length = 714
Score = 138 bits (347), Expect = 7e-32
Identities = 65/107 (60%), Positives = 83/107 (76%), Gaps = 8/107 (7%)
Frame = -3
Query: 538 DEGCAAANGSSDQDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATLQEMRVVKIYID 359
+ G +ANG ++ E+ VK+IR LEC GHI+KNFRQKFLTWYSLRAT QE+RVVKI+ID
Sbjct: 608 NNGDHSANGGTESGLEHCVKIIRQLECSGHIDKNFRQKFLTWYSLRATSQEIRVVKIFID 667
Query: 358 TFLEDPASLAEQLVDTFSECISSKR--------TSTVPAGFCMKLWH 242
TF++DP +LAEQL+DTF + +S KR ++ VP+GFCMKLWH
Sbjct: 668 TFIDDPMALAEQLIDTFDDRVSIKRSAVGGSGASAVVPSGFCMKLWH 714
>gb|AAO00859.1| putative protein [Arabidopsis thaliana]
Length = 685
Score = 138 bits (347), Expect = 7e-32
Identities = 65/107 (60%), Positives = 83/107 (76%), Gaps = 8/107 (7%)
Frame = -3
Query: 538 DEGCAAANGSSDQDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATLQEMRVVKIYID 359
+ G +ANG ++ E+ VK+IR LEC GHI+KNFRQKFLTWYSLRAT QE+RVVKI+ID
Sbjct: 579 NNGDHSANGGTESGLEHCVKIIRQLECSGHIDKNFRQKFLTWYSLRATSQEIRVVKIFID 638
Query: 358 TFLEDPASLAEQLVDTFSECISSKR--------TSTVPAGFCMKLWH 242
TF++DP +LAEQL+DTF + +S KR ++ VP+GFCMKLWH
Sbjct: 639 TFIDDPMALAEQLIDTFDDRVSIKRSAVGGSGASAVVPSGFCMKLWH 685
>ref|NP_200548.1| putative protein; protein id: At5g57380.1 [Arabidopsis thaliana]
gi|9757932|dbj|BAB08475.1|
gene_id:MSF19.4~pir||T14080~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 600
Score = 133 bits (335), Expect = 2e-30
Identities = 69/122 (56%), Positives = 91/122 (74%), Gaps = 3/122 (2%)
Frame = -3
Query: 598 GKREGPQNGSTSKKRIAERPDEGCAAANGSSDQDFEYYVKVIRWLECEGHIEKNFRQKFL 419
GK+ G + + + E+P+ AANG D+D + VK IR LE EGHI+K+FR++FL
Sbjct: 480 GKQGGNKRFKSRTVSLNEKPEIN-NAANGVGDKDLGHIVKTIRCLEEEGHIDKSFRERFL 538
Query: 418 TWYSLRATLQEMRVVKIYIDTFLEDPASLAEQLVDTFSECISSKRTST---VPAGFCMKL 248
TWYSLRAT +E+RVVKI+++TF+ED +SL +QLVDTFSE I SKR+ST VPAG C+KL
Sbjct: 539 TWYSLRATHREVRVVKIFVETFMEDLSSLGQQLVDTFSESILSKRSSTNGVVPAGICLKL 598
Query: 247 WH 242
WH
Sbjct: 599 WH 600
>ref|NP_179478.1| hypothetical protein; protein id: At2g18880.1 [Arabidopsis
thaliana] gi|7485790|pir||T01616 hypothetical protein
At2g18880 [imported] - Arabidopsis thaliana
gi|3004551|gb|AAC09024.1| hypothetical protein
[Arabidopsis thaliana]
Length = 417
Score = 90.1 bits (222), Expect = 2e-17
Identities = 41/77 (53%), Positives = 58/77 (75%)
Frame = -3
Query: 517 NGSSDQDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATLQEMRVVKIYIDTFLEDPA 338
+GS FE V +IR LEC G ++ +FR+KFLTWY L+AT +E VV+I++DTF +D
Sbjct: 321 SGSCSFGFEECVNLIRQLECSGQVKSDFRKKFLTWYCLKATDKEKHVVEIFVDTFKDDKE 380
Query: 337 SLAEQLVDTFSECISSK 287
+LA+QL+DTFS+CI+ K
Sbjct: 381 ALAKQLIDTFSDCITRK 397
>ref|NP_189087.1| hypothetical protein; protein id: At3g24440.1 [Arabidopsis
thaliana] gi|9294095|dbj|BAB01947.1|
emb|CAB52464.1~gene_id:MXP5.1~similar to unknown protein
[Arabidopsis thaliana]
Length = 602
Score = 89.4 bits (220), Expect = 3e-17
Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Frame = -3
Query: 607 NGSGKREGPQNGSTSKKR-IAERPD-EGCAAANGSSDQDFEYYVKVIRWLECEGHIEKNF 434
+GSG G T K++ I++ D E + S D E VKVIRWLE EGHI+ F
Sbjct: 484 DGSGDDTGFDFLMTRKRKAISDSNDSENHECDSSSIDDTLEKCVKVIRWLEREGHIKTTF 543
Query: 433 RQKFLTWYSLRATLQEMRVVKIYIDTFLEDPASLAEQLVDTFSECISSKR 284
R +FLTW+S+ +T QE VV ++ T +DP SLA QLVD F++ +S+KR
Sbjct: 544 RVRFLTWFSMSSTAQEQSVVSTFVQTLEDDPGSLAGQLVDAFTDVVSTKR 593
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,489,034
Number of Sequences: 1393205
Number of extensions: 11399184
Number of successful extensions: 28096
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 27269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28081
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
