Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000573A_C01 KMC000573A_c01
(489 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181349.1| 30S ribosomal protein S31; protein id: At2g3814... 72 6e-25
gb|AAF64154.1|AF236825_1 plastid-specific ribosomal protein 4 pr... 69 2e-12
sp|P47910|RR31_SPIOL 30S RIBOSOMAL PROTEIN S31, CHLOROPLAST gi|4... 47 1e-04
sp|P47909|RR31_ORYSA PUTATIVE 30S RIBOSOMAL PROTEIN S31, CHLOROP... 44 7e-04
ref|NP_565506.1| expressed protein; protein id: At2g21290.1, sup... 40 0.014
>ref|NP_181349.1| 30S ribosomal protein S31; protein id: At2g38140.1, supported by
cDNA: 4723., supported by cDNA: gi_15529181, supported
by cDNA: gi_16974356, supported by cDNA: gi_7578851
[Arabidopsis thaliana] gi|7488308|pir||T01246 30S
ribosomal protein S31 [imported] - Arabidopsis thaliana
gi|3335362|gb|AAC27163.1| 30S ribosomal protein S31
[Arabidopsis thaliana]
gi|7578852|gb|AAF64153.1|AF236826_1 plastid-specific
ribosomal protein 4 precursor [Arabidopsis thaliana]
gi|15529182|gb|AAK97685.1| At2g38140/F16M14.7
[Arabidopsis thaliana] gi|16974357|gb|AAL31104.1|
At2g38140/F16M14.7 [Arabidopsis thaliana]
gi|21618289|gb|AAM67339.1| 30S ribosomal protein S31
[Arabidopsis thaliana]
Length = 118
Score = 71.6 bits (174), Expect(2) = 6e-25
Identities = 41/84 (48%), Positives = 54/84 (63%)
Frame = -2
Query: 488 TLLLQSLPPLPIQLQSSSSHLSFSQSQTFSSPLCTSFTSLSTSATSSISPTPSVYCARGD 309
+L+L + P + + L SS S S++ S T SLSTS++SSI P VYC RGD
Sbjct: 3 SLILGAPPRVTVALPSSRLSSSHSETAGVSLSCFTHQFSLSTSSSSSI---PLVYCGRGD 59
Query: 308 RKTERGKRFNPSFGNARPKDPEEG 237
RKT +GKRFN SFGNARP++ +G
Sbjct: 60 RKTAKGKRFNHSFGNARPRNKSKG 83
Score = 63.5 bits (153), Expect(2) = 6e-25
Identities = 28/41 (68%), Positives = 34/41 (82%)
Frame = -3
Query: 256 PRTQKKGRGPPRLYAPPAPTKKDKFEDNEVVKIDIDESLFS 134
PR + KGRGP R+ PPAP +KDKFE++E +KIDIDESLFS
Sbjct: 77 PRNKSKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFS 117
>gb|AAF64154.1|AF236825_1 plastid-specific ribosomal protein 4 precursor [Spinacia oleracea]
Length = 101
Score = 68.9 bits (167), Expect(2) = 2e-12
Identities = 36/68 (52%), Positives = 46/68 (66%), Gaps = 1/68 (1%)
Frame = -2
Query: 437 SSHLSFSQSQTFSSPLCTSFTSLSTSATSSISPT-PSVYCARGDRKTERGKRFNPSFGNA 261
S SFS SQ+ + +S +LS S++ S SP P +YC RGDRKT +GKRFN SFGNA
Sbjct: 15 SVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNA 74
Query: 260 RPKDPEEG 237
RPK+ +G
Sbjct: 75 RPKNKNKG 82
Score = 23.9 bits (50), Expect(2) = 2e-12
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 256 PRTQKKGRGPPR--LYAPPAPTKKD 188
P+ + KGRGPP+ ++ P++K+
Sbjct: 76 PKNKNKGRGPPKAPIFPKGDPSQKE 100
>sp|P47910|RR31_SPIOL 30S RIBOSOMAL PROTEIN S31, CHLOROPLAST gi|477193|pir||A48391
ribosomal protein S31 - spinach (fragment)
gi|300415|gb|AAB26676.1| ribosomal protein S31 [Spinacia
oleracea=spinach, cv Alwaro, leaves, Peptide Chloroplast
Partial, 43 aa]
Length = 43
Score = 46.6 bits (109), Expect = 1e-04
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -2
Query: 317 RGDRKTERGKRFNPSFGNARPKDPEEG 237
RGDRKT +GKRFN SFGNARPK+ +G
Sbjct: 2 RGDRKTAKGKRFNHSFGNARPKNKNKG 28
>sp|P47909|RR31_ORYSA PUTATIVE 30S RIBOSOMAL PROTEIN S31, CHLOROPLAST PRECURSOR
Length = 62
Score = 44.3 bits (103), Expect = 7e-04
Identities = 18/27 (66%), Positives = 22/27 (80%)
Frame = -2
Query: 332 SVYCARGDRKTERGKRFNPSFGNARPK 252
+V C RGD+KT+RGKRF S+GN RPK
Sbjct: 29 AVTCGRGDKKTKRGKRFKGSYGNXRPK 55
>ref|NP_565506.1| expressed protein; protein id: At2g21290.1, supported by cDNA:
gi_12642937, supported by cDNA: gi_13265516, supported
by cDNA: gi_18252176 [Arabidopsis thaliana]
gi|25412024|pir||E84599 hypothetical protein At2g21290
[imported] - Arabidopsis thaliana
gi|4567264|gb|AAD23677.1| expressed protein [Arabidopsis
thaliana] gi|11692890|gb|AAG40048.1|AF324697_1 At2g21290
[Arabidopsis thaliana]
gi|12642938|gb|AAK00411.1|AF339729_1 unknown protein
[Arabidopsis thaliana] gi|18252177|gb|AAL61921.1|
unknown protein [Arabidopsis thaliana]
gi|23197628|gb|AAN15341.1| unknown protein [Arabidopsis
thaliana]
Length = 98
Score = 40.0 bits (92), Expect = 0.014
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 7/41 (17%)
Frame = -2
Query: 353 SSISPT---PSV----YCARGDRKTERGKRFNPSFGNARPK 252
SS+SP P+V C RGD+KT++GKRF S+GN+R K
Sbjct: 31 SSLSPACAAPAVSEMDLCGRGDKKTKKGKRFKGSYGNSRGK 71
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,152,394
Number of Sequences: 1393205
Number of extensions: 10062701
Number of successful extensions: 40530
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 35972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40099
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
