Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000572A_C02 KMC000572A_c02
(658 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07712 probable ABC-type transport protein T23J7.60 - Arabi... 175 5e-43
ref|NP_190357.2| ABC transporter family protein; protein id: At3... 175 5e-43
dbj|BAB09013.1| contains similarity to ABC transporter~gene_id:K... 166 3e-40
ref|NP_200977.1| ABC transporter family protein; protein id: At5... 166 3e-40
ref|NP_200981.1| ABC transport protein - like; protein id: At5g6... 159 2e-38
>pir||T07712 probable ABC-type transport protein T23J7.60 - Arabidopsis thaliana
gi|4741190|emb|CAB41856.1| ABC-type transport-like
protein [Arabidopsis thaliana]
Length = 1011
Score = 175 bits (443), Expect = 5e-43
Identities = 90/134 (67%), Positives = 108/134 (80%), Gaps = 5/134 (3%)
Frame = -2
Query: 657 REEEFGISDIQLGLTTLEEVFLNIAKPAELESAAAEGSLVTLTLTSGESVQIPVGARFVG 478
REEEFGISDIQLGL TLEEVFLNIA+ AELESAA +G++VTL LTSG SV+IPVGARF+G
Sbjct: 852 REEEFGISDIQLGLATLEEVFLNIARKAELESAAVDGTMVTLDLTSGSSVEIPVGARFIG 911
Query: 477 IPGTESAENPTGCMVEVYWEQDDTGALCISGHSQKVPIPQSVELSTTPTTRPHRN---LG 307
IPGTE+AENP G MVEVYW+QD++G+LCISGHS ++PIP+++ + T P H LG
Sbjct: 912 IPGTETAENPRGVMVEVYWQQDESGSLCISGHSTEMPIPENIPV-TDPVAPGHGGVNLLG 970
Query: 306 R--SESVHGVVIDP 271
R V G+VIDP
Sbjct: 971 RRGRRQVQGIVIDP 984
>ref|NP_190357.2| ABC transporter family protein; protein id: At3g47730.1 [Arabidopsis
thaliana] gi|28393591|gb|AAO42215.1| putative ABC
transporter protein [Arabidopsis thaliana]
gi|28973103|gb|AAO63876.1| putative ABC transporter
protein [Arabidopsis thaliana]
Length = 983
Score = 175 bits (443), Expect = 5e-43
Identities = 90/134 (67%), Positives = 108/134 (80%), Gaps = 5/134 (3%)
Frame = -2
Query: 657 REEEFGISDIQLGLTTLEEVFLNIAKPAELESAAAEGSLVTLTLTSGESVQIPVGARFVG 478
REEEFGISDIQLGL TLEEVFLNIA+ AELESAA +G++VTL LTSG SV+IPVGARF+G
Sbjct: 824 REEEFGISDIQLGLATLEEVFLNIARKAELESAAVDGTMVTLDLTSGSSVEIPVGARFIG 883
Query: 477 IPGTESAENPTGCMVEVYWEQDDTGALCISGHSQKVPIPQSVELSTTPTTRPHRN---LG 307
IPGTE+AENP G MVEVYW+QD++G+LCISGHS ++PIP+++ + T P H LG
Sbjct: 884 IPGTETAENPRGVMVEVYWQQDESGSLCISGHSTEMPIPENIPV-TDPVAPGHGGVNLLG 942
Query: 306 R--SESVHGVVIDP 271
R V G+VIDP
Sbjct: 943 RRGRRQVQGIVIDP 956
>dbj|BAB09013.1| contains similarity to ABC transporter~gene_id:K11J9.22 [Arabidopsis
thaliana]
Length = 953
Score = 166 bits (419), Expect = 3e-40
Identities = 81/128 (63%), Positives = 102/128 (79%)
Frame = -2
Query: 657 REEEFGISDIQLGLTTLEEVFLNIAKPAELESAAAEGSLVTLTLTSGESVQIPVGARFVG 478
RE EFGISDIQLGL TLEEVFLNIA+ AELESA AEG++VTL L SG S++IPVGARFVG
Sbjct: 825 RESEFGISDIQLGLATLEEVFLNIARQAELESATAEGNMVTLELASGISLEIPVGARFVG 884
Query: 477 IPGTESAENPTGCMVEVYWEQDDTGALCISGHSQKVPIPQSVELSTTPTTRPHRNLGRSE 298
IP TE+AENP+G MVEVYW+QD +G++CISGHS ++ +PQ+V ++ P+ + +
Sbjct: 885 IPDTENAENPSGVMVEVYWQQDGSGSMCISGHSSEMRVPQNVPVTRPPSPNALGHKSLRQ 944
Query: 297 SVHGVVID 274
V G+VID
Sbjct: 945 GVRGIVID 952
>ref|NP_200977.1| ABC transporter family protein; protein id: At5g61690.1 [Arabidopsis
thaliana]
Length = 954
Score = 166 bits (419), Expect = 3e-40
Identities = 81/128 (63%), Positives = 102/128 (79%)
Frame = -2
Query: 657 REEEFGISDIQLGLTTLEEVFLNIAKPAELESAAAEGSLVTLTLTSGESVQIPVGARFVG 478
RE EFGISDIQLGL TLEEVFLNIA+ AELESA AEG++VTL L SG S++IPVGARFVG
Sbjct: 826 RESEFGISDIQLGLATLEEVFLNIARQAELESATAEGNMVTLELASGISLEIPVGARFVG 885
Query: 477 IPGTESAENPTGCMVEVYWEQDDTGALCISGHSQKVPIPQSVELSTTPTTRPHRNLGRSE 298
IP TE+AENP+G MVEVYW+QD +G++CISGHS ++ +PQ+V ++ P+ + +
Sbjct: 886 IPDTENAENPSGVMVEVYWQQDGSGSMCISGHSSEMRVPQNVPVTRPPSPNALGHKSLRQ 945
Query: 297 SVHGVVID 274
V G+VID
Sbjct: 946 GVRGIVID 953
>ref|NP_200981.1| ABC transport protein - like; protein id: At5g61730.1 [Arabidopsis
thaliana]
Length = 940
Score = 159 bits (403), Expect = 2e-38
Identities = 82/129 (63%), Positives = 103/129 (79%), Gaps = 1/129 (0%)
Frame = -2
Query: 657 REEEFGISDIQLGLTTLEEVFLNIAKPAELESAAAEGSLVTLTLTSGESVQIPVGARFVG 478
RE EFGI+DIQLGL TLEEVFLNIA+ AELESA EG++VTL L SG +V+IPVGARFVG
Sbjct: 810 RESEFGIADIQLGLATLEEVFLNIARRAELESATVEGTMVTLELESGIAVEIPVGARFVG 869
Query: 477 IPGTESAENPTGCMVEVYWEQDDTGALCISGHSQKVPIPQSVELSTTPTTRPHRNLGRSE 298
IPGTE+AENP G MVEVYW+QD +G++CISGHS ++ IP++V + P+++ LG +
Sbjct: 870 IPGTENAENPRGLMVEVYWQQDGSGSMCISGHSAEMRIPENVSVIYEPSSQV---LGHGQ 926
Query: 297 -SVHGVVID 274
V G+VID
Sbjct: 927 RRVRGIVID 935
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,451,415
Number of Sequences: 1393205
Number of extensions: 11875226
Number of successful extensions: 31576
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31536
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
