Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000571A_C01 KMC000571A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E86331 hypothetical protein F6F9.12 - Arabidopsis thaliana ... 55 5e-07
ref|NP_173412.1| unknown protein; protein id: At1g19835.1 [Arabi... 55 5e-07
ref|NP_573332.2| CG7282-PA [Drosophila melanogaster] gi|22832530... 40 0.028
ref|NP_195335.1| myosin-like protein; protein id: At4g36120.1 [A... 39 0.047
ref|NP_014713.1| Gtpase activating protein for Ypt1p; Gyp1p [Sac... 39 0.062
>pir||E86331 hypothetical protein F6F9.12 - Arabidopsis thaliana
gi|10086489|gb|AAG12549.1|AC007797_9 Unknown Protein
[Arabidopsis thaliana]
Length = 1024
Score = 55.5 bits (132), Expect = 5e-07
Identities = 32/60 (53%), Positives = 41/60 (68%)
Frame = -3
Query: 462 NSLFSPSDNDSHLPARSPVQHSKSKPKHRPSKSASSSASSATTPEKQARGFSRFFSPKGK 283
+ L SPSD D+ P+ + ++ S KHR +KS SSS+SS TPEK +RGFSRFFS K K
Sbjct: 926 SKLSSPSDKDT--PSMNTMK-SPVASKHRHTKSNSSSSSSGLTPEKHSRGFSRFFSTKAK 982
>ref|NP_173412.1| unknown protein; protein id: At1g19835.1 [Arabidopsis thaliana]
Length = 982
Score = 55.5 bits (132), Expect = 5e-07
Identities = 32/60 (53%), Positives = 41/60 (68%)
Frame = -3
Query: 462 NSLFSPSDNDSHLPARSPVQHSKSKPKHRPSKSASSSASSATTPEKQARGFSRFFSPKGK 283
+ L SPSD D+ P+ + ++ S KHR +KS SSS+SS TPEK +RGFSRFFS K K
Sbjct: 926 SKLSSPSDKDT--PSMNTMK-SPVASKHRHTKSNSSSSSSGLTPEKHSRGFSRFFSTKAK 982
>ref|NP_573332.2| CG7282-PA [Drosophila melanogaster] gi|22832530|gb|AAF48895.2|
CG7282-PA [Drosophila melanogaster]
Length = 1868
Score = 39.7 bits (91), Expect = 0.028
Identities = 31/88 (35%), Positives = 45/88 (50%), Gaps = 6/88 (6%)
Frame = -3
Query: 576 EEPATSSPNFQNFGQLEMNNTATAFVKRPGSESPLQFSN-SLFSPSDNDSHLPARSPV-Q 403
+ PA S P Q +M T V PG+ +P + S+ S+ S SD+DS P R P Q
Sbjct: 270 KSPAASQPQLQQ----QMKKRPTRVV--PGTTTPRRVSDASMASESDSDSDEPVRRPKRQ 323
Query: 402 HSKSKPK----HRPSKSASSSASSATTP 331
+K KP+ P K +S++S+T P
Sbjct: 324 SAKDKPQAGKAQPPGKGRLASSASSTAP 351
>ref|NP_195335.1| myosin-like protein; protein id: At4g36120.1 [Arabidopsis thaliana]
gi|7487187|pir||T05505 hypothetical protein T19K4.250 -
Arabidopsis thaliana gi|3036816|emb|CAA18506.1|
myosin-like protein [Arabidopsis thaliana]
gi|7270564|emb|CAB81521.1| myosin-like protein
[Arabidopsis thaliana]
Length = 981
Score = 38.9 bits (89), Expect = 0.047
Identities = 22/48 (45%), Positives = 29/48 (59%)
Frame = -3
Query: 423 PARSPVQHSKSKPKHRPSKSASSSASSATTPEKQARGFSRFFSPKGKH 280
P+RS V+H+ + H KS+S S+SS EK RG RFFS K K+
Sbjct: 932 PSRS-VKHTVNPTVHAIMKSSSVSSSSKEDNEKHTRGLGRFFSSKSKN 978
>ref|NP_014713.1| Gtpase activating protein for Ypt1p; Gyp1p [Saccharomyces
cerevisiae] gi|23821647|sp|Q08484|GYP1_YEAST
GTPase-activating protein GYP1 (GAP for YPT1)
gi|2132046|pir||S66953 hypothetical protein YOR070c -
yeast (Saccharomyces cerevisiae)
gi|1420221|emb|CAA99263.1| ORF YOR070c [Saccharomyces
cerevisiae] gi|2104882|emb|CAA94555.1| YOR29-21
[Saccharomyces cerevisiae]
Length = 637
Score = 38.5 bits (88), Expect = 0.062
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Frame = -3
Query: 564 TSSPNFQNFGQLEMNNTATAFVKRPGSESPLQFSNSLFSPSDNDSHLPARSPVQHSK--- 394
TS NF+ + + + T+ S SPL++ N S + N+S PA QH +
Sbjct: 68 TSDGNFEAMAKQQASTRRTS-----NSYSPLRYVNPTLSTASNESPRPALLLRQHHQRHH 122
Query: 393 --SKPKHRPSKSASSSASSATTPEKQ 322
+P+H S S ++ S++T P K+
Sbjct: 123 HHQQPRHSSSGSVGNNCSNSTEPNKK 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,805,245
Number of Sequences: 1393205
Number of extensions: 11766377
Number of successful extensions: 39214
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 35293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38724
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
