Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000570A_C01 KMC000570A_c01
(468 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_228427.1| similar to RIKEN cDNA 6330544B05 [Mus musculus]... 33 1.1
ref|NP_688354.1| transcriptional regulator, RofA family [Strepto... 33 1.5
gb|AAF27322.1| putative transposase [Lactococcus lactis] 31 5.6
ref|XP_243579.1| hypothetical protein XP_243579 [Rattus norvegicus] 30 9.5
ref|NP_709406.1| putative LPS biosynthesis enzyme [Shigella flex... 30 9.5
>ref|XP_228427.1| similar to RIKEN cDNA 6330544B05 [Mus musculus] [Rattus norvegicus]
Length = 471
Score = 33.5 bits (75), Expect = 1.1
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 154 NSTISSKILM--TFLFSPTWPLPHTPSKQVLHFRTITSI 264
N T+++K+L+ LF+P WP H+P + L T TSI
Sbjct: 93 NETLTTKLLLGLLLLFTPIWPTGHSPYLKALKAVTFTSI 131
>ref|NP_688354.1| transcriptional regulator, RofA family [Streptococcus agalactiae
2603V/R] gi|25011468|ref|NP_735863.1| unknown
[Streptococcus agalactiae NEM316]
gi|22534383|gb|AAN00227.1|AE014254_7 transcriptional
regulator, RofA family [Streptococcus agalactiae
2603V/R] gi|24413006|emb|CAD47085.1| unknown
[Streptococcus agalactiae NEM316]
Length = 503
Score = 33.1 bits (74), Expect = 1.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 102 LHFNQGLPGYVVCIFTMKFNNLFQNTHDISVLPNLAIATYTKQASSSFQN 251
+ N+GL Y+ +F + LF N DI++ A+Y S +F+N
Sbjct: 248 IELNEGLLDYLYLVFCISDGPLFSNRDDININEEFIFASYKISKSKAFKN 297
>gb|AAF27322.1| putative transposase [Lactococcus lactis]
Length = 226
Score = 31.2 bits (69), Expect = 5.6
Identities = 18/81 (22%), Positives = 35/81 (42%)
Frame = +3
Query: 48 IWIRLYKQIITGTGYLKKLHFNQGLPGYVVCIFTMKFNNLFQNTHDISVLPNLAIATYTK 227
IW+R ++ +LK+LH G P +V + F+ + + P T+
Sbjct: 102 IWLRKKRETQAAYAFLKRLHKQFGEPKAIVTDKAPSLGSAFRKLQSVGLYPK------TE 155
Query: 228 QASSSFQNHNVHKD*EQIRRK 290
+ + N+ + +D IRR+
Sbjct: 156 HRTVKYLNNLIEQDHRPIRRR 176
>ref|XP_243579.1| hypothetical protein XP_243579 [Rattus norvegicus]
Length = 141
Score = 30.4 bits (67), Expect = 9.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 190 LFSPTWPLPHTPSKQVLHFRTITSIKIESKLEGSFGQHEKIT 315
L W +P + S H RT+ + +E+ SFG E IT
Sbjct: 79 LIDGPWGIPQSQSAIRSHTRTVLGLTVENPGRSSFGDEESIT 120
>ref|NP_709406.1| putative LPS biosynthesis enzyme [Shigella flexneri 2a str. 301]
gi|24054136|gb|AAN45113.1|AE015374_9 putative LPS
biosynthesis enzyme [Shigella flexneri 2a str. 301]
Length = 335
Score = 30.4 bits (67), Expect = 9.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 322 TLKLFFHVDRNFLLICSQSLWTLWF*NEELACLVYV 215
TL + F +DRNFL C ++ ++ N E++C +V
Sbjct: 26 TLDIAFGIDRNFLFGCGVAIASILLNNREISCEFHV 61
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,612,379
Number of Sequences: 1393205
Number of extensions: 8825662
Number of successful extensions: 19136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19133
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
