Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000569A_C01 KMC000569A_c01
(859 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA36646.1| GLP_400_7455_4195 [Giardia lamblia ATCC 50803] 37 0.49
gb|AAF60179.1|AF239729_2 P40 [Indian peanut clump virus L] 35 1.1
gb|EAA19796.1| hypothetical protein [Plasmodium yoelii yoelii] 33 4.2
>gb|EAA36646.1| GLP_400_7455_4195 [Giardia lamblia ATCC 50803]
Length = 1086
Score = 36.6 bits (83), Expect = 0.49
Identities = 19/49 (38%), Positives = 30/49 (60%)
Frame = -2
Query: 810 TDTAEPSQLKEEVDSLRLKLASYEENIKTLQTVLISYIEMKEGTVPEEF 664
T TA Q ++E+D L++ LA+ E I TLQ L +Y E EG + +++
Sbjct: 514 TQTALVGQSQKEIDILKISLATAENTISTLQQALATYTE--EGNLKQQY 560
>gb|AAF60179.1|AF239729_2 P40 [Indian peanut clump virus L]
Length = 354
Score = 35.4 bits (80), Expect = 1.1
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = -2
Query: 813 NTDTAEPSQLKEEVDSLRLKLASYEENIKTLQTVLISYIEMKEGTVPEEFG 661
+++TAE + LK E+ RLKL++ E N+ T+Q + + + K + E+FG
Sbjct: 194 SSETAELTALKNELAECRLKLSACESNLLTVQGLTVDDYKQKWLDLAEKFG 244
>gb|EAA19796.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1841
Score = 33.5 bits (75), Expect = 4.2
Identities = 20/56 (35%), Positives = 30/56 (52%)
Frame = +3
Query: 423 YFLNDLENTQTHLNKKKY*SMRYMKYISTFSYFPSQTKSLKYTKHV*FKLDYYLVK 590
Y N+LEN + H + +Y + Y+ I TF Y P+Q + L YT KL + + K
Sbjct: 772 YKYNNLENLEIHTKQNEY-NCIYINDIVTFKYIPNQVQEL-YTNRTDKKLKHKIEK 825
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 701,809,778
Number of Sequences: 1393205
Number of extensions: 14611236
Number of successful extensions: 32683
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32675
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45431072631
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
