Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000567A_C01 KMC000567A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79753.1|AC009317_12 T30E16.17 [Arabidopsis thaliana] 75 7e-13
pir||H96619 protein T30E16.17 [imported] - Arabidopsis thaliana 75 7e-13
ref|NP_176170.1| dynamin-like protein; protein id: At1g59610.1, ... 75 7e-13
dbj|BAA88113.1| dynamin-like protein [Arabidopsis thaliana] 75 7e-13
pir||B86237 protein F14N23.17 [imported] - Arabidopsis thaliana ... 69 4e-11
>gb|AAF79753.1|AC009317_12 T30E16.17 [Arabidopsis thaliana]
Length = 1092
Score = 74.7 bits (182), Expect = 7e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Frame = -1
Query: 546 GGHSRRYSDPSQNGDMSPGSNSSSRRTTPARLPPAPPSSGSRY 418
GGHSRRYSDP+QNG+ S GS SSRRTTP RLPPAPP SGS Y
Sbjct: 1048 GGHSRRYSDPAQNGEDSSGSGGSSRRTTPNRLPPAPPQSGSSY 1090
>pir||H96619 protein T30E16.17 [imported] - Arabidopsis thaliana
Length = 1092
Score = 74.7 bits (182), Expect = 7e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Frame = -1
Query: 546 GGHSRRYSDPSQNGDMSPGSNSSSRRTTPARLPPAPPSSGSRY 418
GGHSRRYSDP+QNG+ S GS SSRRTTP RLPPAPP SGS Y
Sbjct: 1048 GGHSRRYSDPAQNGEDSSGSGGSSRRTTPNRLPPAPPQSGSSY 1090
>ref|NP_176170.1| dynamin-like protein; protein id: At1g59610.1, supported by cDNA:
gi_15146178, supported by cDNA: gi_4803835, supported by
cDNA: gi_6526968 [Arabidopsis thaliana]
gi|25453548|pir||T52426 dynamin-like protein [imported] -
Arabidopsis thaliana gi|6526969|dbj|BAA88111.1|
dynamin-like protein [Arabidopsis thaliana]
gi|15146179|gb|AAK83573.1| At1g59610/T30E16_17
[Arabidopsis thaliana] gi|23397259|gb|AAN31911.1|
putative dynamin protein [Arabidopsis thaliana]
Length = 920
Score = 74.7 bits (182), Expect = 7e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Frame = -1
Query: 546 GGHSRRYSDPSQNGDMSPGSNSSSRRTTPARLPPAPPSSGSRY 418
GGHSRRYSDP+QNG+ S GS SSRRTTP RLPPAPP SGS Y
Sbjct: 876 GGHSRRYSDPAQNGEDSSGSGGSSRRTTPNRLPPAPPQSGSSY 918
>dbj|BAA88113.1| dynamin-like protein [Arabidopsis thaliana]
Length = 921
Score = 74.7 bits (182), Expect = 7e-13
Identities = 34/43 (79%), Positives = 36/43 (83%)
Frame = -1
Query: 546 GGHSRRYSDPSQNGDMSPGSNSSSRRTTPARLPPAPPSSGSRY 418
GGHSRRYSDP+QNG+ S GS SSRRTTP RLPPAPP SGS Y
Sbjct: 877 GGHSRRYSDPAQNGEDSSGSGGSSRRTTPNRLPPAPPQSGSSY 919
>pir||B86237 protein F14N23.17 [imported] - Arabidopsis thaliana
gi|4914331|gb|AAD32879.1|AC005489_17 F14N23.17
[Arabidopsis thaliana]
Length = 992
Score = 68.9 bits (167), Expect = 4e-11
Identities = 30/43 (69%), Positives = 35/43 (80%)
Frame = -1
Query: 546 GGHSRRYSDPSQNGDMSPGSNSSSRRTTPARLPPAPPSSGSRY 418
GGHSRRYSDP+QNGD + + S+RRTTP RLPPAPP +GS Y
Sbjct: 948 GGHSRRYSDPAQNGDAASPGSGSNRRTTPNRLPPAPPPTGSAY 990
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,744,170
Number of Sequences: 1393205
Number of extensions: 10213892
Number of successful extensions: 33531
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 31796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33444
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
