Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000565A_C01 KMC000565A_c01
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187143.1| putative ribosomal protein s19 or s24; protein ... 216 2e-55
prf||1909359A ribosomal protein S19 216 2e-55
gb|AAM63791.1| 40S ribosomal protein S19-like [Arabidopsis thali... 213 1e-54
ref|NP_198158.1| 40S ribosomal protein S19 - like; protein id: A... 212 3e-54
gb|AAG23693.1| 40S ribosomal protein S24 [Zea mays] 211 5e-54
>ref|NP_187143.1| putative ribosomal protein s19 or s24; protein id: At3g04920.1,
supported by cDNA: 25350., supported by cDNA:
gi_15215671, supported by cDNA: gi_17065189, supported
by cDNA: gi_20259967, supported by cDNA: gi_20334887
[Arabidopsis thaliana] gi|11134742|sp|Q9SS17|RS24_ARATH
40S ribosomal protein S24
gi|12322851|gb|AAG51413.1|AC009465_13 putative ribosomal
protein s19 or s24; 43956-42880 [Arabidopsis thaliana]
gi|15215672|gb|AAK91381.1| AT3g04920/T9J14_13
[Arabidopsis thaliana] gi|17065190|gb|AAL32749.1|
putative ribosomal protein [Arabidopsis thaliana]
gi|20259968|gb|AAM13331.1| putative ribosomal protein
s19 or s24 [Arabidopsis thaliana]
gi|20334888|gb|AAM16200.1| AT3g04920/T9J14_13
[Arabidopsis thaliana] gi|21554374|gb|AAM63481.1|
putative ribosomal protein s19 or s24 [Arabidopsis
thaliana]
Length = 133
Score = 216 bits (549), Expect = 2e-55
Identities = 102/117 (87%), Positives = 114/117 (97%)
Frame = -2
Query: 577 NRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFKFRTHFGGGKSTGFG 398
NRLLSRKQF++DVLHPGRANVSKAELKEKLAR+Y+VKDPN +FVFKFRTHFGGGKS+GFG
Sbjct: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFG 75
Query: 397 LIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADAAK 227
LIYD++E+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Sbjct: 76 LIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDAKK 132
>prf||1909359A ribosomal protein S19
Length = 133
Score = 216 bits (549), Expect = 2e-55
Identities = 104/117 (88%), Positives = 112/117 (94%)
Frame = -2
Query: 577 NRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFKFRTHFGGGKSTGFG 398
NRLL+RKQFI+DVLHPGRANVSKAELKEKLAR+Y+VKD N +FVFKFRTHFGGGKSTGFG
Sbjct: 16 NRLLARKQFIIDVLHPGRANVSKAELKEKLARMYEVKDTNAIFVFKFRTHFGGGKSTGFG 75
Query: 397 LIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADAAK 227
LIYDS+ENAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKK+RGVKK KA DA K
Sbjct: 76 LIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKVRGVKKIKAGDAKK 132
>gb|AAM63791.1| 40S ribosomal protein S19-like [Arabidopsis thaliana]
Length = 133
Score = 213 bits (543), Expect = 1e-54
Identities = 100/117 (85%), Positives = 113/117 (96%)
Frame = -2
Query: 577 NRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFKFRTHFGGGKSTGFG 398
NRLL+RKQF++DVLHPGRANVSKAELKEKLAR+Y+VKDPN +F FKFRTHFGGGKS+G+G
Sbjct: 16 NRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYG 75
Query: 397 LIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADAAK 227
LIYD++ENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Sbjct: 76 LIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDAKK 132
>ref|NP_198158.1| 40S ribosomal protein S19 - like; protein id: At5g28060.1,
supported by cDNA: 27178., supported by cDNA:
gi_14423509, supported by cDNA: gi_18377453 [Arabidopsis
thaliana] gi|14423510|gb|AAK62437.1|AF386992_1 Unknown
protein [Arabidopsis thaliana]
gi|18377454|gb|AAL66893.1| unknown protein [Arabidopsis
thaliana]
Length = 133
Score = 212 bits (539), Expect = 3e-54
Identities = 99/117 (84%), Positives = 112/117 (95%)
Frame = -2
Query: 577 NRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFKFRTHFGGGKSTGFG 398
NRLL+RKQF++DVLHPGRANVSKAELKEKLAR+Y+VKDPN +F FKFRTHFGGGKS+G+G
Sbjct: 16 NRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYG 75
Query: 397 LIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADAAK 227
LIYD++ENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA D K
Sbjct: 76 LIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDTKK 132
>gb|AAG23693.1| 40S ribosomal protein S24 [Zea mays]
Length = 137
Score = 211 bits (537), Expect = 5e-54
Identities = 100/117 (85%), Positives = 114/117 (96%)
Frame = -2
Query: 577 NRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFKFRTHFGGGKSTGFG 398
NRLL+RKQF+++V+HPGRANVSKAELKE+LA++Y+VKDPNT+FVFKFRTHFGGGKSTGFG
Sbjct: 20 NRLLARKQFVLEVIHPGRANVSKAELKERLAKMYEVKDPNTIFVFKFRTHFGGGKSTGFG 79
Query: 397 LIYDSLENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTKAADAAK 227
LIYD+LE+AKK+EPKYRLIRNGL TKVEKSRKQ+KERKNRAKKIRGVKKTKA DA K
Sbjct: 80 LIYDNLESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAKK 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,383,971
Number of Sequences: 1393205
Number of extensions: 9483881
Number of successful extensions: 30156
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 28906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30022
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
