Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000560A_C01 KMC000560A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_810209.1| V-type ATP synthase subunit I [Bacteroides thet... 35 0.71
gb|EAA20901.1| m1-family aminopeptidase [Plasmodium yoelii yoelii] 31 7.9
>ref|NP_810209.1| V-type ATP synthase subunit I [Bacteroides thetaiotaomicron
VPI-5482] gi|29338603|gb|AAO76403.1| V-type ATP synthase
subunit I [Bacteroides thetaiotaomicron VPI-5482]
Length = 603
Score = 34.7 bits (78), Expect = 0.71
Identities = 15/49 (30%), Positives = 31/49 (62%), Gaps = 4/49 (8%)
Frame = -3
Query: 452 KRELETQYELVLMNRVLAEVWFQKLDNSAQ----SLEQVAMPSFSSSHV 318
K E ET+Y +++NR+ ++V+F + + Q +EQ +P++S +H+
Sbjct: 142 KEEWETEYNAMIINRISSKVFFVTVTKAGQEVDLDVEQAKLPAYSLAHL 190
>gb|EAA20901.1| m1-family aminopeptidase [Plasmodium yoelii yoelii]
Length = 1064
Score = 31.2 bits (69), Expect = 7.9
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Frame = -3
Query: 515 GKLVEKYMTLFQNLDTAVELKKRELETQYELVLM------------NRVLAEVWFQKLDN 372
G + K + +F N D+ + KK ++ +E +L NRV WFQ
Sbjct: 435 GAMENKGLNIF-NADSLLASKKTSIDFSFERILTVVGHEYFHNYTGNRVTLRDWFQLTLK 493
Query: 371 SAQSLEQVAMPSFSSSHVSRSHISHIPAQRFEQFTTERPPI*SAVNPST 225
++ + + S ++ + ++HI R QF + P+ + P +
Sbjct: 494 EGLTVHRENLFSEETTKTATFRLTHIDLLRSVQFLEDSSPLSHPIRPES 542
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,377,403
Number of Sequences: 1393205
Number of extensions: 8247904
Number of successful extensions: 20028
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20025
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
