Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000558A_C01 KMC000558A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189908.2| putative protein; protein id: At3g43220.1, supp... 38 0.11
pir||T49236 hypothetical protein F7K15.70 - Arabidopsis thaliana... 38 0.11
gb|AAK55932.1|AF267226_2 ATP synthase gamma subunit [Candidatus ... 32 6.2
>ref|NP_189908.2| putative protein; protein id: At3g43220.1, supported by cDNA:
gi_20453209 [Arabidopsis thaliana]
Length = 818
Score = 37.7 bits (86), Expect = 0.11
Identities = 18/43 (41%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Frame = -3
Query: 597 GDTTPSTSDL-DSSSKGSHSGRSKVLEEFPDTFVHWVTNGQTL 472
G + P+ S+ SSSKG +K+ E+FPD+F WV G+ L
Sbjct: 774 GQSAPTISESGSSSSKGKEPMGTKIREDFPDSFKEWVAYGEAL 816
>pir||T49236 hypothetical protein F7K15.70 - Arabidopsis thaliana
gi|7649362|emb|CAB89043.1| putative protein [Arabidopsis
thaliana]
Length = 794
Score = 37.7 bits (86), Expect = 0.11
Identities = 18/43 (41%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Frame = -3
Query: 597 GDTTPSTSDL-DSSSKGSHSGRSKVLEEFPDTFVHWVTNGQTL 472
G + P+ S+ SSSKG +K+ E+FPD+F WV G+ L
Sbjct: 750 GQSAPTISESGSSSSKGKEPMGTKIREDFPDSFKEWVAYGEAL 792
>gb|AAK55932.1|AF267226_2 ATP synthase gamma subunit [Candidatus Carsonella ruddii]
Length = 250
Score = 32.0 bits (71), Expect = 6.2
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +3
Query: 123 KIDSNNIYKKCT*SDHELMKLK*RKKCYNLLLFTISYYTLRIDNSVIELMLRVNTMK 293
KI N+Y+K + +E+ + K N + FT+ Y L ++N EL LR+ TMK
Sbjct: 158 KIIKTNLYEKIKKNFYEIKNINIYKLINNYINFTLKY--LYLENYFSELKLRMITMK 212
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,468,973
Number of Sequences: 1393205
Number of extensions: 8954033
Number of successful extensions: 16122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16122
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
