Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000556A_C02 KMC000556A_c02
(905 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL38378.1| At2g13540/T10F5.8 [Arabidopsis thaliana] gi|23308... 107 2e-22
ref|NP_565356.1| putative cap-binding protein; protein id: At2g1... 107 2e-22
gb|AAG54079.1| nuclear cap-binding protein CBP80 [Oryza sativa s... 99 7e-20
ref|XP_224912.1| similar to MADH2 protein [Gallus gallus] [Rattu... 33 5.9
gb|AAN72032.1| Unknown protein [Arabidopsis thaliana] 33 7.7
>gb|AAL38378.1| At2g13540/T10F5.8 [Arabidopsis thaliana] gi|23308493|gb|AAN18216.1|
At2g13540/T10F5.8 [Arabidopsis thaliana]
Length = 848
Score = 107 bits (268), Expect = 2e-22
Identities = 55/120 (45%), Positives = 86/120 (70%), Gaps = 1/120 (0%)
Frame = -1
Query: 899 VLKERLPKGSEARTLRELKSVQVDEMAVDPEEPSSMELDNENQKPEDSQSNGGKKSNAYN 720
VLKERLP ++ R++++LKS+ ++ ++PS+M++D+EN P+ S
Sbjct: 744 VLKERLPDPTKVRSVQDLKSIGAED-----DKPSAMDVDSENGNPKKS----------CE 788
Query: 719 IGEKEQWCITTLGYVKAFSRQYASEIWPLIEKLDAEVMT-EEVPPLFRSAVYSALRRPIN 543
+GE+EQWC++TLGY+ AF+RQYASEIWP +EKL++EV + E+V PLF A+ SAL+ P++
Sbjct: 789 VGEREQWCLSTLGYLTAFTRQYASEIWPHMEKLESEVFSGEDVHPLFLQAISSALQFPLH 848
>ref|NP_565356.1| putative cap-binding protein; protein id: At2g13540.1, supported by
cDNA: gi_15192737, supported by cDNA: gi_17473508,
supported by cDNA: gi_8515770 [Arabidopsis thaliana]
gi|8515771|gb|AAF76167.1|AF268377_1 nuclear cap-binding
protein CBP80 [Arabidopsis thaliana]
gi|15192738|gb|AAK91588.1|AF272891_1 mRNA cap binding
protein [Arabidopsis thaliana] gi|20198048|gb|AAD22677.2|
putative cap-binding protein [Arabidopsis thaliana]
Length = 848
Score = 107 bits (268), Expect = 2e-22
Identities = 55/120 (45%), Positives = 86/120 (70%), Gaps = 1/120 (0%)
Frame = -1
Query: 899 VLKERLPKGSEARTLRELKSVQVDEMAVDPEEPSSMELDNENQKPEDSQSNGGKKSNAYN 720
VLKERLP ++ R++++LKS+ ++ ++PS+M++D+EN P+ S
Sbjct: 744 VLKERLPDPTKVRSVQDLKSIGAED-----DKPSAMDVDSENGNPKKS----------CE 788
Query: 719 IGEKEQWCITTLGYVKAFSRQYASEIWPLIEKLDAEVMT-EEVPPLFRSAVYSALRRPIN 543
+GE+EQWC++TLGY+ AF+RQYASEIWP +EKL++EV + E+V PLF A+ SAL+ P++
Sbjct: 789 VGEREQWCLSTLGYLTAFTRQYASEIWPHMEKLESEVFSGEDVHPLFLQAISSALQFPLH 848
>gb|AAG54079.1| nuclear cap-binding protein CBP80 [Oryza sativa subsp. japonica]
Length = 910
Score = 99.4 bits (246), Expect = 7e-20
Identities = 54/111 (48%), Positives = 70/111 (62%), Gaps = 2/111 (1%)
Frame = -1
Query: 899 VLKERLPKGSEARTLRELKS--VQVDEMAVDPEEPSSMELDNENQKPEDSQSNGGKKSNA 726
VL ERLP S + L++ V+ A DPE ++ME+DNEN DSQ NG K +
Sbjct: 743 VLTERLPPISADGDVPNLRAGDPNVNSSARDPEA-TTMEIDNENGGDNDSQLNGQNKKIS 801
Query: 725 YNIGEKEQWCITTLGYVKAFSRQYASEIWPLIEKLDAEVMTEEVPPLFRSA 573
+N+GE EQWC+ TLGY+K+FSRQYA+EIW I LD E+ + PL R A
Sbjct: 802 HNVGELEQWCLCTLGYLKSFSRQYATEIWSHIAMLDQEIFVGNIHPLIRKA 852
>ref|XP_224912.1| similar to MADH2 protein [Gallus gallus] [Rattus norvegicus]
Length = 332
Score = 33.1 bits (74), Expect = 5.9
Identities = 19/48 (39%), Positives = 24/48 (49%)
Frame = -3
Query: 288 GFTCGEPNFCICWDL*WLLLFLHSHESTPYFVTFVYFCTCGFQKEKSN 145
GFT C+ + WL L LHSH+ VT + C C FQ EK +
Sbjct: 139 GFTWAMGAMCVAYY--WLCLDLHSHDK----VTSIANCECCFQSEKKS 180
>gb|AAN72032.1| Unknown protein [Arabidopsis thaliana]
Length = 254
Score = 32.7 bits (73), Expect = 7.7
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 731 YFSSHHLTDCLQVSGSHCLIPLMMVLQGPLPSH 829
+F+ HL D L+V G + +P ++++ GP+ SH
Sbjct: 179 FFTESHLNDALRVVGENVHVPDLLLVYGPIRSH 211
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 731,977,293
Number of Sequences: 1393205
Number of extensions: 15832824
Number of successful extensions: 41536
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 39283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41482
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 49363855696
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
