Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000555A_C01 KMC000555A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA42109.1| GLP_254_55952_56890 [Giardia lamblia ATCC 50803] 33 2.8
ref|NP_485069.1| folylpolyglutamate synthase [Nostoc sp. PCC 712... 32 3.6
emb|CAB85606.1| MUC4/X apomucin [Homo sapiens] 32 4.8
ref|NP_612154.1| mucin 4, isoform e [Homo sapiens] 32 4.8
ref|NP_703794.1| integral membrane protein [Plasmodium falciparu... 32 4.8
>gb|EAA42109.1| GLP_254_55952_56890 [Giardia lamblia ATCC 50803]
Length = 312
Score = 32.7 bits (73), Expect = 2.8
Identities = 31/102 (30%), Positives = 44/102 (42%), Gaps = 14/102 (13%)
Frame = -3
Query: 331 PSSEVGMESLKWSSSG------CLCSVLFAVY----KEGNHRDDIKFENRESDFPSPVTK 182
PS + +S K ++ G CL SV V+ K +HR D+K + S F P+ K
Sbjct: 209 PSRDPSTQSHKQANKGTMTHSLCLKSVAIQVHSQPPKASDHRQDVKKKLTVSAFVHPIRK 268
Query: 181 -PAI---PGCFDYTITPWIL*YLPLLCFSFSSIYSELCNNKK 68
P I PG + P Y + S++ IY L N K
Sbjct: 269 QPKIEYHPGAISSLVHPA---YSSSVLQSYTEIYKSLSNTSK 307
>ref|NP_485069.1| folylpolyglutamate synthase [Nostoc sp. PCC 7120]
gi|25293652|pir||AG1934 folylpolyglutamate synthase
[imported] - Nostoc sp. (strain PCC 7120)
gi|17130372|dbj|BAB72983.1| folylpolyglutamate synthase
[Nostoc sp. PCC 7120]
Length = 417
Score = 32.3 bits (72), Expect = 3.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 259 PQIVRYINIQNYSTLKIPFPLQNLVQ 336
PQ+ Y +IQN T+K P PLQ +Q
Sbjct: 223 PQLAEYQSIQNTKTIKYPLPLQGQIQ 248
>emb|CAB85606.1| MUC4/X apomucin [Homo sapiens]
Length = 1125
Score = 32.0 bits (71), Expect = 4.8
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = -3
Query: 298 WSSSGCLCSVLF-------AVYKEGNHRDDIKFENRESDFPSPVTKPA 176
W S CLC L +++ G D++F R DF SP+ KPA
Sbjct: 11 WVSLSCLCLCLLPHVVPGVSLFPYGADAGDLEFVRRTVDFTSPLFKPA 58
>ref|NP_612154.1| mucin 4, isoform e [Homo sapiens]
Length = 1125
Score = 32.0 bits (71), Expect = 4.8
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = -3
Query: 298 WSSSGCLCSVLF-------AVYKEGNHRDDIKFENRESDFPSPVTKPA 176
W S CLC L +++ G D++F R DF SP+ KPA
Sbjct: 11 WVSLSCLCLCLLPHVVPGVSLFPYGADAGDLEFVRRTVDFTSPLFKPA 58
>ref|NP_703794.1| integral membrane protein [Plasmodium falciparum 3D7]
gi|23498455|emb|CAD50406.1| integral membrane protein
[Plasmodium falciparum 3D7]
Length = 1347
Score = 32.0 bits (71), Expect = 4.8
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = -1
Query: 309 NL*SGVVLDVYVAYYLRSTRKETTGMILNSKIVSRIFHLLLPNQPYPAALTTLLLHGSYN 130
N+ + D+Y +Y ++K +I N + IF ++ + + + LHG N
Sbjct: 479 NILKSIKNDLYNTFYWLFSQKGLQYIIKNYNVSVEIFIHIICSLLIIIFNSIIFLHGFVN 538
Query: 129 ICLYYVFLFLQFTQNFVIIRRYSL-----LFRFSL*YFHLLIFL 13
I YY LF I+ + L +F+F+ YF+ ++F+
Sbjct: 539 I--YYNSLFFIHLLTLCILSMFYLNNKRFIFKFTTQYFYFILFI 580
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,763,811
Number of Sequences: 1393205
Number of extensions: 9680663
Number of successful extensions: 25007
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 24223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24989
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
