Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000554A_C01 KMC000554A_c01
(666 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC41874.1| unknown protein [Arabidopsis thaliana] 154 8e-37
ref|NP_187029.1| unknown protein; protein id: At3g03790.1 [Arabi... 154 8e-37
dbj|BAC07425.1| putative UVB-resistance protein [Oryza sativa (j... 120 2e-26
ref|NP_003196.1| transcription factor 12 [Homo sapiens] gi|17083... 37 0.18
dbj|BAB85005.1| FLJ00252 protein [Homo sapiens] 35 0.70
>dbj|BAC41874.1| unknown protein [Arabidopsis thaliana]
Length = 1078
Score = 154 bits (390), Expect = 8e-37
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = -1
Query: 657 QXAEEISTPPWAASATPPQPSXPSLRHIQMQQGKKQQTLSNSPKTKTSGFAIATGQGSPS 478
Q E TPPWA+S TP + S PSLR IQMQ+ KKQQ+LS+SPKTKTSGF +ATGQGSPS
Sbjct: 973 QSDVEKGTPPWASSETPRKLSRPSLRDIQMQEVKKQQSLSHSPKTKTSGFTVATGQGSPS 1032
Query: 477 EATGVSRWFKPEAETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQ 343
++ G +RWFKPE + PS+IRSIQIEEKAMKDL+RFYSSVK+VR Q
Sbjct: 1033 DSPGTNRWFKPEIDAPSAIRSIQIEEKAMKDLRRFYSSVKVVRNQ 1077
>ref|NP_187029.1| unknown protein; protein id: At3g03790.1 [Arabidopsis thaliana]
gi|6006862|gb|AAF00638.1|AC009540_15 unknown protein
[Arabidopsis thaliana]
Length = 1073
Score = 154 bits (390), Expect = 8e-37
Identities = 75/105 (71%), Positives = 88/105 (83%)
Frame = -1
Query: 657 QXAEEISTPPWAASATPPQPSXPSLRHIQMQQGKKQQTLSNSPKTKTSGFAIATGQGSPS 478
Q E TPPWA+S TP + S PSLR IQMQ+ KKQQ+LS+SPKTKTSGF +ATGQGSPS
Sbjct: 968 QSDVEKGTPPWASSETPRKLSRPSLRDIQMQEVKKQQSLSHSPKTKTSGFTVATGQGSPS 1027
Query: 477 EATGVSRWFKPEAETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQ 343
++ G +RWFKPE + PS+IRSIQIEEKAMKDL+RFYSSVK+VR Q
Sbjct: 1028 DSPGTNRWFKPEIDAPSAIRSIQIEEKAMKDLRRFYSSVKVVRNQ 1072
>dbj|BAC07425.1| putative UVB-resistance protein [Oryza sativa (japonica
cultivar-group)]
Length = 1073
Score = 120 bits (301), Expect = 2e-26
Identities = 64/104 (61%), Positives = 79/104 (75%), Gaps = 5/104 (4%)
Frame = -1
Query: 639 STPPWAASATPPQPSXPSLRHIQMQQGKKQQTLSNSPKTKTSGFAIATGQGSPSEATGV- 463
ST W++SAT P PSLR IQMQQ K+Q +S+SPKT+TSGFAI + QG+ E G+
Sbjct: 969 STLSWSSSATSPNVLRPSLRDIQMQQEKRQTGISHSPKTRTSGFAIPS-QGTSPEVGGIK 1027
Query: 462 ----SRWFKPEAETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQ 343
+RWFKPEA+ PSSIRSIQIEE+AMKD KRFYS+V+IV+ Q
Sbjct: 1028 DNVPNRWFKPEADAPSSIRSIQIEEQAMKDFKRFYSNVRIVKPQ 1071
>ref|NP_003196.1| transcription factor 12 [Homo sapiens]
gi|1708332|sp|Q99081|HTF4_HUMAN TRANSCRIPTION FACTOR 12
(TRANSCRIPTION FACTOR HTF-4) (E-BOX-BINDING PROTEIN)
(DNA-BINDING PROTEIN HTF4) gi|284144|pir||A42121
transcription factor HTF4 - human
gi|183930|gb|AAA58632.1| helix-loop-helix protein
gi|184448|gb|AAB62389.1| transcription factor [Homo
sapiens]
Length = 682
Score = 37.4 bits (85), Expect = 0.18
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Frame = -1
Query: 639 STPPWAASATPPQPSXPSLRHIQMQQGKKQQT-------LSN--SPKTKTSGFAI--ATG 493
S+P AAS TPP S+ + QT L++ SP +S F +T
Sbjct: 304 SSPYVAASHTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYSPDHTSSSFPSNPSTP 363
Query: 492 QGSPSEATGVSRWFKPEAETPSS---IRSIQIEEKAMKD-LKRFYSSVKIVRKQQV 337
GSPS TG S+W +P + PSS S+ + M+D L R ++ ++R V
Sbjct: 364 VGSPSPLTGTSQWPRPGGQAPSSPSYENSLHSLQSRMEDRLDRLDDAIHVLRNHAV 419
>dbj|BAB85005.1| FLJ00252 protein [Homo sapiens]
Length = 819
Score = 35.4 bits (80), Expect = 0.70
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = -1
Query: 639 STPPWAASATPPQPSXPSLRHIQMQQGKKQQTLSNSPKTKTSGFAIATGQGSPSEATGVS 460
+TPPW A +P P R G+K +++SP I G+P TG +
Sbjct: 715 ATPPWPAGRGGLRPGSPGCRRGLQSSGRKVGPVTHSPDLG----CILESPGTPGWMTGGA 770
Query: 459 RWFKPEAETPSSI 421
+W +P+++
Sbjct: 771 QWPSAPGTSPTTV 783
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,147,386
Number of Sequences: 1393205
Number of extensions: 9790975
Number of successful extensions: 29702
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 28140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29644
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
