Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000549A_C01 KMC000549A_c01
(648 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P27571|XIST_MOUSE X INACTIVE SPECIFIC TRANSCRIPT PROTEIN gi|1... 33 2.5
ref|NP_702268.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.6
ref|NP_197132.1| putative protein; protein id: At5g16280.1 [Arab... 32 7.3
>sp|P27571|XIST_MOUSE X INACTIVE SPECIFIC TRANSCRIPT PROTEIN gi|110062|pir||S15433
hypothetical protein - mouse gi|1181245|emb|CAA41978.1|
ORF [Mus musculus] gi|227806|prf||1711440A xist gene
Length = 298
Score = 33.5 bits (75), Expect = 2.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 425 VCSMIPVFLPLLLFGQKELLLHFFFPNFRVVLVSSMC 535
VC +P F+ LLL LLH F P+F +L+S +C
Sbjct: 59 VCLCLPCFVYLLLPCVSNSLLHLFLPSFACLLLSFVC 95
>ref|NP_702268.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497449|gb|AAN36992.1|AE014822_27 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2204
Score = 32.3 bits (72), Expect = 5.6
Identities = 16/52 (30%), Positives = 31/52 (58%)
Frame = +1
Query: 10 SHFINKSIYILYYFIK*YHSFHNKKNIIPYSS*LTTFYTVVKHFRLANLKTK 165
SH N+ +L +IK +S +N+ N++PY+S T F + +++ +KT+
Sbjct: 467 SHINNQKTILLTSYIKEQNSNNNQDNVMPYNSSNTLFDKIKNSQKISFIKTE 518
>ref|NP_197132.1| putative protein; protein id: At5g16280.1 [Arabidopsis thaliana]
gi|11358177|pir||T51498 hypothetical protein T21H19_200 -
Arabidopsis thaliana gi|9755838|emb|CAC01869.1| putative
protein [Arabidopsis thaliana]
Length = 1265
Score = 32.0 bits (71), Expect = 7.3
Identities = 13/21 (61%), Positives = 15/21 (70%)
Frame = -2
Query: 635 ETRKHSGKCHGYKYYLTVIQS 573
E+ SG C GY YYLTV+QS
Sbjct: 1244 ESATSSGTCQGYPYYLTVLQS 1264
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,224,501
Number of Sequences: 1393205
Number of extensions: 10818311
Number of successful extensions: 22445
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22439
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
