Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000548A_C01 KMC000548A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO42115.1| putative kinesin [Arabidopsis thaliana] 38 0.11
pir||T00434 probable kinesin heavy chain [imported] - Arabidopsi... 38 0.11
ref|NP_182272.2| kinesin-related protein; protein id: At2g47500.... 38 0.11
gb|EAA17439.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.6
>gb|AAO42115.1| putative kinesin [Arabidopsis thaliana]
Length = 983
Score = 37.7 bits (86), Expect = 0.11
Identities = 20/42 (47%), Positives = 25/42 (58%)
Frame = -2
Query: 582 SDSSEPDLLXQFNHSKLNSVTXGMGSKTMRSVSKAPKTPELR 457
SDSSEPDLL QFN S + SK + VSK ++P+ R
Sbjct: 902 SDSSEPDLLWQFNQSTKIPTRSNIESKLKKPVSKPIRSPQSR 943
>pir||T00434 probable kinesin heavy chain [imported] - Arabidopsis thaliana
gi|2529677|gb|AAC62860.1| putative kinesin heavy chain
[Arabidopsis thaliana]
Length = 861
Score = 37.7 bits (86), Expect = 0.11
Identities = 20/42 (47%), Positives = 25/42 (58%)
Frame = -2
Query: 582 SDSSEPDLLXQFNHSKLNSVTXGMGSKTMRSVSKAPKTPELR 457
SDSSEPDLL QFN S + SK + VSK ++P+ R
Sbjct: 820 SDSSEPDLLWQFNQSTKIPTRSNIESKLKKPVSKPIRSPQSR 861
>ref|NP_182272.2| kinesin-related protein; protein id: At2g47500.1 [Arabidopsis
thaliana]
Length = 974
Score = 37.7 bits (86), Expect = 0.11
Identities = 20/42 (47%), Positives = 25/42 (58%)
Frame = -2
Query: 582 SDSSEPDLLXQFNHSKLNSVTXGMGSKTMRSVSKAPKTPELR 457
SDSSEPDLL QFN S + SK + VSK ++P+ R
Sbjct: 893 SDSSEPDLLWQFNQSTKIPTRSNIESKLKKPVSKPIRSPQSR 934
>gb|EAA17439.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 5309
Score = 33.1 bits (74), Expect = 2.6
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 187 SLSQNLKNKINKKSLFVRL*LHVFTFDSQVSVSRQLKLDAFLFD 318
+L++ +KNK+NK F+ VFT+ + VS K D FL D
Sbjct: 1964 NLNEQIKNKLNKMEKFINNFKSVFTWHDGILVSSLKKGDIFLMD 2007
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,540,149
Number of Sequences: 1393205
Number of extensions: 8794506
Number of successful extensions: 19899
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19887
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
