Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000547A_C03 KMC000547A_c03
(727 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T01103 probable H+-transporting two-sector ATPase (EC 3.6.3... 172 3e-42
gb|AAM96955.1| mitochondrial F1-ATPase, gamma subunit (ATP3_ARAT... 172 3e-42
ref|NP_180863.1| mitochondrial F1-ATPase, gamma subunit (ATP3_AR... 172 3e-42
sp|P26360|ATP3_IPOBA ATP synthase gamma chain, mitochondrial pre... 167 1e-40
gb|AAM00946.1|AC021892_10 Putative ATP SYNTHASE GAMMA CHAIN, MIT... 159 3e-38
>pir||T01103 probable H+-transporting two-sector ATPase (EC 3.6.3.14) gamma
chain, mitochondrial - Arabidopsis thaliana
Length = 323
Score = 172 bits (437), Expect = 3e-42
Identities = 93/133 (69%), Positives = 109/133 (81%)
Frame = -1
Query: 727 VEFDALRIVFNKFHSVVQFYPTVSTVLSPEIVERETESGGMLGELDSYEIEGGDSKSEIL 548
VEFDALRIV+NKFHSVV F PTVSTVLSPEI+E+E+E GG LGELDSYEIEGG++K EIL
Sbjct: 189 VEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYEIEGGETKGEIL 248
Query: 547 QNLSEFQFSCVMFNAVLENACSEPRSQGCLLWTALAGIAGDMLDRLTLTYNRTRHSIHYP 368
QNL+EFQFSCVMFNAVLENACSE ++ + ++ AG+MLDRLTLTYNRTR +
Sbjct: 249 QNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRN-AGEMLDRLTLTYNRTRQA-SIT 306
Query: 367 *HLIEIIFGACSV 329
LIEII GA ++
Sbjct: 307 TELIEIISGASAL 319
>gb|AAM96955.1| mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH) [Arabidopsis
thaliana] gi|23198402|gb|AAN15728.1| mitochondrial
F1-ATPase, gamma subunit (ATP3_ARATH) [Arabidopsis
thaliana]
Length = 325
Score = 172 bits (437), Expect = 3e-42
Identities = 93/133 (69%), Positives = 109/133 (81%)
Frame = -1
Query: 727 VEFDALRIVFNKFHSVVQFYPTVSTVLSPEIVERETESGGMLGELDSYEIEGGDSKSEIL 548
VEFDALRIV+NKFHSVV F PTVSTVLSPEI+E+E+E GG LGELDSYEIEGG++K EIL
Sbjct: 191 VEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYEIEGGETKGEIL 250
Query: 547 QNLSEFQFSCVMFNAVLENACSEPRSQGCLLWTALAGIAGDMLDRLTLTYNRTRHSIHYP 368
QNL+EFQFSCVMFNAVLENACSE ++ + ++ AG+MLDRLTLTYNRTR +
Sbjct: 251 QNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRN-AGEMLDRLTLTYNRTRQA-SIT 308
Query: 367 *HLIEIIFGACSV 329
LIEII GA ++
Sbjct: 309 TELIEIISGASAL 321
>ref|NP_180863.1| mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH); protein id:
At2g33040.1, supported by cDNA: 26812., supported by
cDNA: gi_14517357, supported by cDNA: gi_1655479,
supported by cDNA: gi_17065101, supported by cDNA:
gi_20857421 [Arabidopsis thaliana]
gi|3334123|sp|Q96250|ATP3_ARATH ATP synthase gamma
chain, mitochondrial precursor gi|25290513|pir||F84740
hypothetical protein At2g33040 [imported] - Arabidopsis
thaliana gi|1655480|dbj|BAA13599.1| gamma subunit of
mitochondrial F1-ATPase [Arabidopsis thaliana]
gi|2924787|gb|AAC04916.1| mitochondrial F1-ATPase, gamma
subunit (ATP3_ARATH) [Arabidopsis thaliana]
gi|14517358|gb|AAK62570.1| At2g33040/F25I18.22
[Arabidopsis thaliana] gi|17065102|gb|AAL32705.1|
mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)
[Arabidopsis thaliana] gi|20196990|gb|AAM14859.1|
mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH)
[Arabidopsis thaliana] gi|20857422|gb|AAM26719.1|
At2g33040/F25I18.22 [Arabidopsis thaliana]
gi|21554962|gb|AAM63740.1| mitochondrial F1-ATPase,
gamma subunit (ATP3_ARATH) [Arabidopsis thaliana]
Length = 325
Score = 172 bits (437), Expect = 3e-42
Identities = 93/133 (69%), Positives = 109/133 (81%)
Frame = -1
Query: 727 VEFDALRIVFNKFHSVVQFYPTVSTVLSPEIVERETESGGMLGELDSYEIEGGDSKSEIL 548
VEFDALRIV+NKFHSVV F PTVSTVLSPEI+E+E+E GG LGELDSYEIEGG++K EIL
Sbjct: 191 VEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSYEIEGGETKGEIL 250
Query: 547 QNLSEFQFSCVMFNAVLENACSEPRSQGCLLWTALAGIAGDMLDRLTLTYNRTRHSIHYP 368
QNL+EFQFSCVMFNAVLENACSE ++ + ++ AG+MLDRLTLTYNRTR +
Sbjct: 251 QNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRN-AGEMLDRLTLTYNRTRQA-SIT 308
Query: 367 *HLIEIIFGACSV 329
LIEII GA ++
Sbjct: 309 TELIEIISGASAL 321
>sp|P26360|ATP3_IPOBA ATP synthase gamma chain, mitochondrial precursor
gi|1076684|pir||A47493 H+-transporting two-sector ATPase
(EC 3.6.3.14) gamma chain precursor, mitochondrial -
sweet potato gi|303626|dbj|BAA03526.1| F1-ATPase gammma
subunit [Ipomoea batatas]
Length = 326
Score = 167 bits (424), Expect = 1e-40
Identities = 91/133 (68%), Positives = 108/133 (80%)
Frame = -1
Query: 727 VEFDALRIVFNKFHSVVQFYPTVSTVLSPEIVERETESGGMLGELDSYEIEGGDSKSEIL 548
VEFDALRIVFNKF SVV F PT+STVLSPE+VERE+ESGG LG+LDSYEIEG +SKSE+L
Sbjct: 194 VEFDALRIVFNKFQSVVSFVPTMSTVLSPEVVERESESGGKLGDLDSYEIEGAESKSEVL 253
Query: 547 QNLSEFQFSCVMFNAVLENACSEPRSQGCLLWTALAGIAGDMLDRLTLTYNRTRHSIHYP 368
QNL+EFQFS V+FNAVLENACSE ++ + ++ AG+MLDRLTLTYNRTR +
Sbjct: 254 QNLTEFQFSSVLFNAVLENACSEQGARMSAMDSSSRN-AGEMLDRLTLTYNRTRQA-SIT 311
Query: 367 *HLIEIIFGACSV 329
LIEII GA ++
Sbjct: 312 TELIEIISGASAL 324
>gb|AAM00946.1|AC021892_10 Putative ATP SYNTHASE GAMMA CHAIN, MITOCHONDRIAL PRECURSOR [Oryza
sativa] gi|22725928|gb|AAN04938.1| Putative ATP SYNTHASE
GAMMA CHAIN, MITOCHONDRIAL PRECURSOR [Oryza sativa
(japonica cultivar-group)]
Length = 368
Score = 159 bits (403), Expect = 3e-38
Identities = 84/133 (63%), Positives = 109/133 (81%)
Frame = -1
Query: 727 VEFDALRIVFNKFHSVVQFYPTVSTVLSPEIVERETESGGMLGELDSYEIEGGDSKSEIL 548
VE+DALR+VFNKFHSV+ F PT++T+LSPE++E+E+ESG +G+LDSYEIEGG++KSEIL
Sbjct: 237 VEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESG-KVGDLDSYEIEGGETKSEIL 295
Query: 547 QNLSEFQFSCVMFNAVLENACSEPRSQGCLLWTALAGIAGDMLDRLTLTYNRTRHSIHYP 368
QNL+EFQFSCVM+NA LENACSE ++ + ++ AG+MLDRLTLTYNRTR +
Sbjct: 296 QNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRN-AGEMLDRLTLTYNRTRQA-SIT 353
Query: 367 *HLIEIIFGACSV 329
LIEII GA ++
Sbjct: 354 TELIEIISGASAL 366
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,481,317
Number of Sequences: 1393205
Number of extensions: 13401995
Number of successful extensions: 35585
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 34088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35502
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
