Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000546A_C01 KMC000546A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO22581.1| putative protein kinase [Arabidopsis thaliana] 58 8e-08
gb|AAL38867.1| putative protein kinase [Arabidopsis thaliana] 58 8e-08
ref|NP_177200.1| Ste-20 related kinase SPAK, putative; protein i... 36 0.44
ref|NP_241631.1| BH0765~unknown conserved protein [Bacillus halo... 34 1.7
dbj|BAA83954.1| unknown [Bacillus halodurans] 34 1.7
>gb|AAO22581.1| putative protein kinase [Arabidopsis thaliana]
Length = 674
Score = 58.2 bits (139), Expect = 8e-08
Identities = 31/55 (56%), Positives = 39/55 (70%)
Frame = -1
Query: 602 QVPPATTRERELHFQVIQLQQSIGSLVEELQRQKMKNVQFFGLQLEKQLNSMVNK 438
Q PPAT+REREL QV+ LQQS SL EEL++QK KN QLE QLN++ ++
Sbjct: 623 QTPPATSRERELQSQVMLLQQSFSSLTEELKKQKQKNG-----QLENQLNALTHR 672
>gb|AAL38867.1| putative protein kinase [Arabidopsis thaliana]
Length = 674
Score = 58.2 bits (139), Expect = 8e-08
Identities = 31/55 (56%), Positives = 39/55 (70%)
Frame = -1
Query: 602 QVPPATTRERELHFQVIQLQQSIGSLVEELQRQKMKNVQFFGLQLEKQLNSMVNK 438
Q PPAT+REREL QV+ LQQS SL EEL++QK KN QLE QLN++ ++
Sbjct: 623 QTPPATSRERELQSQVMLLQQSFSSLTEELKKQKQKNG-----QLENQLNALTHR 672
>ref|NP_177200.1| Ste-20 related kinase SPAK, putative; protein id: At1g70430.1
[Arabidopsis thaliana]
Length = 594
Score = 35.8 bits (81), Expect = 0.44
Identities = 20/47 (42%), Positives = 33/47 (69%)
Frame = -1
Query: 581 RERELHFQVIQLQQSIGSLVEELQRQKMKNVQFFGLQLEKQLNSMVN 441
+E++L QV L+QS+ LVEE+QR+K N QLE+Q++S+++
Sbjct: 548 QEKDLQSQVQFLEQSVEKLVEEVQRRKDIN-----SQLEQQISSLIS 589
>ref|NP_241631.1| BH0765~unknown conserved protein [Bacillus halodurans]
gi|25489483|pir||E83745 hypothetical protein BH0765
[imported] - Bacillus halodurans (strain C-125)
gi|10173379|dbj|BAB04484.1| BH0765~unknown conserved
protein [Bacillus halodurans]
Length = 315
Score = 33.9 bits (76), Expect = 1.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 543 TEHWEPCRGIAKAKNEKCSVFWFAARET 460
T+ W CR IAKA E + W AAR+T
Sbjct: 36 TQKWFSCRAIAKALTEHLPMMWLAARQT 63
>dbj|BAA83954.1| unknown [Bacillus halodurans]
Length = 286
Score = 33.9 bits (76), Expect = 1.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 543 TEHWEPCRGIAKAKNEKCSVFWFAARET 460
T+ W CR IAKA E + W AAR+T
Sbjct: 73 TQKWFSCRAIAKALTEHLPMMWLAARQT 100
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,671,239
Number of Sequences: 1393205
Number of extensions: 9513852
Number of successful extensions: 16938
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16938
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
