Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000544A_C10 KMC000544A_c10
(881 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_344696.1| hypothetical protein [Streptococcus pneumoniae ... 33 7.4
gb|EAA24561.1| Integral membrane protein [Fusobacterium nucleatu... 33 7.4
>ref|NP_344696.1| hypothetical protein [Streptococcus pneumoniae TIGR4]
gi|15902196|ref|NP_357746.1| Conserved hypothetical
protein [Streptococcus pneumoniae R6]
gi|25388212|pir||G95017 hypothetical protein SP0154
[imported] - Streptococcus pneumoniae (strain TIGR4)
gi|25508091|pir||H97890 conserved hypothetical protein
spr0152 [imported] - Streptococcus pneumoniae (strain
R6) gi|14971620|gb|AAK74336.1| hypothetical protein
[Streptococcus pneumoniae TIGR4]
gi|15457693|gb|AAK98956.1| Conserved hypothetical
protein [Streptococcus pneumoniae R6]
Length = 204
Score = 32.7 bits (73), Expect = 7.4
Identities = 29/109 (26%), Positives = 55/109 (49%), Gaps = 16/109 (14%)
Frame = -3
Query: 879 INIVLEVKVYLL------SIYHL-----SVLYVVLI---YSHNILTKVYITITYQNNMKQ 742
+ +VL +YLL +I HL +VL V LI Y+ ++ +VY ++Y+N++K
Sbjct: 82 VGLVLTYGLYLLVQLPHQTIVHLIATLLNVLVVALIFLAYTVSLKLQVYFALSYRNSLKL 141
Query: 741 ARGARGGIKEYFGVSIVVRVNFRSEL--XFNFFFPLHVFFWRVGIFAFF 601
+ I + ++ V +V + L ++ P +FF +G++ FF
Sbjct: 142 SL-----IGIFMSLAAVAKVLLGTVLLVAIGYYMPALLFFVGIGMWHFF 185
>gb|EAA24561.1| Integral membrane protein [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 166
Score = 32.7 bits (73), Expect = 7.4
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -3
Query: 879 INIVLEVKVYLLSIYHLSVLYVVLIYSHNILTKVYITITY-QNNMKQARGARGGIKEYFG 703
INI L++ ++ L ++ L+ LY++ +YI I+Y +N + +G Y
Sbjct: 97 INIFLQIYIFYLLVFSLATLYII----------IYIVISYCRNKSVKIKGVELAFAPYIC 146
Query: 702 VSIVVRVNF 676
++ ++ NF
Sbjct: 147 LAFIIIYNF 155
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 714,158,799
Number of Sequences: 1393205
Number of extensions: 15510448
Number of successful extensions: 37246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36985
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47660818527
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
